Array 1 43497-47306 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAWT01000014.1 Pyramidobacter sp. CG50-2 NODE_14_length_47306_cov_185.461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43497 28 100.0 33 ............................ CGCTTAACAATACGTACAAAGCCACCCCGTCCG 43558 28 100.0 33 ............................ GTGAATCTCGAGGACGCCGCGGCCGGCGAGAAC 43619 28 100.0 33 ............................ CTGCATTTCAAGTTGGCCGAAGACATCCCGTAC 43680 28 100.0 33 ............................ TGCTCTGCATCGTCAAGTACAAGCACGACTTCT 43741 28 100.0 33 ............................ CCACGTCGGCAACCGCCCCATCCAGACGTGGAA 43802 28 100.0 33 ............................ CCTGCCATGACCTTCGTGCAGTGCTCGGGCGCC 43863 28 100.0 33 ............................ TTTGCGCGCTCTGCCTTTTCTGGACGTGGATAG 43924 28 100.0 33 ............................ CTTATTGCAACAAGAAAAAATGGCATACCGTGC 43985 28 100.0 33 ............................ TCTGTTTGCCGCCGGAGACGCTCGGCGCCCTAA 44046 28 100.0 33 ............................ TGTTTACGAAACTCGCGCGCACGTTCTTCAATA 44107 28 100.0 33 ............................ CGATTCGACGCTTCAGACGCTCGGCCGCCTGCG 44168 28 100.0 33 ............................ CCGGAGCGGGATTGTACCCGTACAAGGGATTAT 44229 28 100.0 33 ............................ TAAACCTGACAAAAGCGAGGTGAGCAAATGGGC 44290 28 100.0 33 ............................ TCTGTTTGCCGCCGGAGACGCTCGGCGCCCTAA 44351 28 100.0 33 ............................ CGAGATCCGTGCCCTGATCCGCCAGAACGCCAA 44412 28 100.0 33 ............................ CACTTACGCCTTCGACGTGTCCGGCAACAAGGG 44473 28 100.0 33 ............................ CACGAGTACGAGCGGCTGATCGACCGTCACGAG 44534 28 100.0 33 ............................ TGGTACCAGTGCCGCATGTGCCCGGCGCACGAG 44595 28 100.0 33 ............................ CTCCCACTCCCTTGGCGGCGTAAAATCGCTTGT 44656 28 100.0 33 ............................ CATGGAAAAACTGAGGTGCTACAGGCAGTTTAG 44717 28 100.0 33 ............................ TCAAAAAGGAGCCCGCCGATGCAAGACACGAAA 44778 28 100.0 33 ............................ CACAACGATCAACTGCGCCCTCGGCAATTACGT 44839 28 100.0 33 ............................ CACAACGGAGGTAGTAGATGAGAGTGCGCAAGT 44900 28 100.0 33 ............................ CGGCGGTTTGTCCAATCCCGCTTCCGTGGATCT 44961 28 100.0 33 ............................ TCTATCCACATCCTTTTCGCTTGAACCGTCCCA 45022 28 100.0 33 ............................ CTGCGCGACCGGTGCAAAGTGCTGGCCGCCTAC 45083 28 100.0 33 ............................ CTTATTTTCGACATGTTCATACTTCCTTCTCCA 45144 28 100.0 33 ............................ TGGATCCGTCGCTTTGTGGTTCGCCATCGTAAT 45205 28 100.0 33 ............................ CTACCTCGATCATCTCGGCGCGCTGCTGGGAGT 45266 28 100.0 33 ............................ GTCTGAGGGAGTACGCGGAGGGCACGGCATGAG 45327 28 100.0 33 ............................ TGAACTTTATCGCCGAAAACGCGGTTTGGGAAG 45388 28 100.0 33 ............................ CTTTATCATGGCGCCTACCGATCCGCCGAAGCC 45449 28 100.0 33 ............................ TGCTGTTTTGGTACTCGCGCGCGCAGAGTATGC 45510 28 100.0 33 ............................ CGAGGGCACGGGGCTGCTGGTCGCGGCGGCTTC 45571 28 100.0 33 ............................ GCGCGCCATCCCGGCGAGCGCGGACGGTCGATG 45632 28 100.0 33 ............................ TTCAATTCCCTCGCGTCGAGCCATTTTTGCGGC 45693 28 100.0 33 ............................ CCCACGTGACCACGATGGCCAGCGTGCGGACGA 45754 28 100.0 33 ............................ CACGGAGTACATCCGCGCCGTCACGAGGAAAAC 45815 28 100.0 33 ............................ TACTGAAACGCTGGAACGAGTCCGGCTTCGTGC 45876 28 100.0 33 ............................ CTTTAGTGGCAAGACTGCGCCCGTATGTGGACG 45937 28 100.0 33 ............................ CATGACCACAAGTGGGTCCGGGCTTGTTATGCC 45998 28 100.0 33 ............................ CGGGGTCTCGGGCGGAGAAGCTGCGGCTCAAGG 46059 28 100.0 33 ............................ TACAAGCGACTCCGGCATCGGCCGGGGCCGCTT 46120 28 100.0 33 ............................ CAATGAAAGAGTTCAGGATCGACATCCCCGAAG 46181 28 100.0 33 ............................ CCACAGCATCGACGCCCTGCGCTACGCCCTGTG 46242 28 100.0 33 ............................ CGACGCCGCGAAGGTGCGCATCGCCTCGCTGCC 46303 28 100.0 33 ............................ TTCAAGACGCCATCGACGAGCGCGGGCGTGAAA 46364 28 100.0 33 ............................ CCATGGCTCGACGCCCTTCATCACTGTTCTCAC 46425 28 100.0 33 ............................ CGAAGGCTATGATCGAGTTGAAAAGGTAGAGCA 46486 28 100.0 33 ............................ CTCGCCAAAAAAGCGAGGGGGTATCCACGTCCA 46547 28 100.0 33 ............................ CGAGCGTCCATGCTCCGTCGCTGTATACGGCGG 46608 28 100.0 33 ............................ CGCGTAAAGCGGGGTTGTCGCACACATAGGGCG 46669 28 100.0 33 ............................ CGGCGTACCGCATCCGGGCATTATCGAGGCGAC 46730 28 100.0 33 ............................ TATCGCTGCAAGCGACCCAAAGGAGGAGGTGTG 46791 28 100.0 33 ............................ TGGATGTGACGTCCGAGTCTGAAGAGCCTGTAT 46852 28 100.0 33 ............................ CATTGCCGGCTCTGACAAACTTCTTTTAACCTA 46913 28 100.0 33 ............................ CTTGACACGGTACAGAGTCGTCGACGCCATGGC 46974 28 100.0 33 ............................ CGGGTTCCTCTTCATCGCCTCGTGCAAGGGGCA 47035 28 100.0 33 ............................ CAAGAAATGACAATCGTCTCCGAAGCCGGCCTC 47096 28 100.0 33 ............................ TTCTGATAGCACGATATGGAGCATCATCCTTAC 47157 28 100.0 33 ............................ CGAGCGAGACATGCATCAACATCGGCGACCTCG 47218 28 100.0 33 ............................ CGCGTAAAGCGGGGTTGTCGCACACATAGGGCG 47279 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 63 28 100.0 33 CAAAACCCCGCACATGCGGGGATGAACC # Left flank : ACCGTTGTGATAACTAACAATGTCCCCATGAAGTATCGGGGATTCCTCGCCTCTTGCATGCTAGAGCTGGCTCCGGGCGTCTACAGTCATCCTAAGATGTCCGCCGGAATTCGCCAGCGGATGTGGAGTGTTATGGAAAAGTGGTACAATGAACAAGAGATCGGAAACAGTTCTATTATGCTGATTTGGAGTGATTCCTCCCGATCTGGCGGACAAGGAGTAGAATGTCTTGGAATACCAGTTCGGACTGTTCTCGACTGCGACGGGATCCTGCTGAGTCGCCTCGGCGATCAAGAAACGGAGCAGCAGAAACAGCAGCTTCGAAAGATCGTGGATAAAAAATATGAATATTCTGATAAATAGGCGGTGCGTCTTTTATGAATAACTCATAGAAATCAATCATATCTATTCTCCTTAACACTTTATATATCAATTAAATGCTGATAAATTACGTTTTAAGAAGATATTAAGACTTGTCCTAATAATGTACAACAGGAAGA # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAAACCCCGCACATGCGGGGATGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 50-1907 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAWT01000028.1 Pyramidobacter sp. CG50-2 NODE_28_length_33058_cov_175.647, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50 28 100.0 33 ............................ TTTTTTCATCGCTGTCCGTATAGCGATGATTAC 111 28 100.0 33 ............................ CTATTCCAGCTCCGGGAACCGCAATCCCTACAC 172 28 100.0 33 ............................ TTTAAGAAGAAAGGCGGCGTCTAGCTATGCAGT 233 28 100.0 33 ............................ CTTTATCACAGACAACAAATCATACCTATAAAA 294 28 100.0 33 ............................ TTCGACTACGACCAGACCGACATGGCCTGCCCC 355 28 100.0 33 ............................ CTCCGCGTGGGGGTTCCGCGTGGGGACGGCGTG 416 28 100.0 33 ............................ TGAGGTATGGCGCGCCGAGTTGTTTGGCGGCAG 477 28 100.0 33 ............................ TGACTTCGATATTGGCGTATTGCCTTGGTTAGG 538 28 100.0 33 ............................ TACGTGCCGTTCTGCGGCGGCACCCAGGTGAAC 599 28 100.0 33 ............................ TAAATCAAGCATGAAAAAGCGAGGTGATCTCTT 660 28 100.0 33 ............................ TCATCGTTACCAGGAAGAACGAAGAAAACGTCG 721 28 100.0 33 ............................ TAGACATCGTTCCGCCAAGCACGGAATCGAAAA 782 28 100.0 33 ............................ TGACCACTGTGTCATTGTTTAGCCTCCTGATGT 843 28 100.0 33 ............................ TATCACCGCTTCACCGGCATGACGCCGAACACG 904 28 100.0 33 ............................ CTGCAAGTCGTTATCGATTCCACCGAAGCCGAA 965 28 100.0 33 ............................ TCAAAAAAGCGCGTATATCTTCTAAGGTTAGCC 1026 28 100.0 33 ............................ ATGGTCGTTCCTCTGCTGCTGGGCGTCGTCGTC 1087 28 100.0 33 ............................ TCTGACCATTGGCCATCTGCTGCAGCTTGACGT 1148 28 100.0 33 ............................ CAGCCCCGTCGCCCTTTGCCAGGAGATGCGGGC 1209 28 100.0 33 ............................ CTCCTACGCCGCCGAAGGGACGCTGGCACACGA 1270 28 100.0 33 ............................ CTTGTGCAGGCGTACCAGGTCGAAGGCGTTCAC 1331 28 100.0 33 ............................ CAATGGGCGGACACGATGGCGCTGGCCAACTAC 1392 28 100.0 33 ............................ TCACCTCGTCGTGGATGTGGCTCACGATCTCGT 1453 28 100.0 33 ............................ TATGTCAGGGTAAGCGTTCATGTACCGTTTATT 1514 28 100.0 33 ............................ GTCTTTCGCCTGCGAGAACAACTGGCTGTAGCG 1575 28 100.0 33 ............................ TATCAGCATCGCATCACCTCTTCAAAAGAAAAT 1636 28 100.0 33 ............................ TCCACATCGTCCCCGTGCCCGCCGGTTCCAAGC 1697 28 100.0 33 ............................ CTGAAACATTAAGCGCAACTGCAAGAGCTTGAA 1758 28 100.0 33 ............................ TTTCCTCGACCACTCGTCACATTTCTCAGACGG 1819 28 100.0 33 ............................ TCATAGAGTCCGACGCCGTCCAGCTCCGACAGA 1880 28 75.0 0 ..................AT..AAGG.A | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.2 33 CAAAACCCCGCACATGCGGGGATGAACC # Left flank : CATGCGGGGATGAACCCGCGTAAAGCGGGGTTGTCGCACACATAGGGCGC # Right flank : AAAATTTAACAAGAGGCCGCCTCAATACTCGATTGAGGTGGCCTCTTGGCTGTTTTTCTCCGTATCCGCATTTCTTCGTGAAAGTTTCTGCCTACAGTCCCCAGTTTTGGCTTTCGGTCTGCAGGCGGGCCATGCGTGCGAACGGGCCGCCGCGGCGCAGCAGCTCGCCGGGCGCACCCTGCTCGGCAACGGCGCCGCCGGAGAGCACGACGATCTTGTCGGCGCTGGCGACGGTGCGCAGGCGATGGGCGATGACGAGCACGGTCTTGTCGCGGATCAGGCGCGACAGGGCGGCCTGGATCTGCGATTCGTTCTCCACGTCCAACGCGGCGGTCGCCTCGTCGAGCAGGACGATCGGTGCGTCTTTGAGGATGGCGCGGGCGATGGAAATGCGCTGGCGCTCGCCGCCCGACAGCTCGCGCCCGTTTTCGCCGATCATGGTCCGCCAGCCCTCGGGCAGCTTGTCCACGAACTCATCGCAGTGAGCCAAACGAGCGGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAAACCCCGCACATGCGGGGATGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //