Array 1 2769989-2768489 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009508.1 Methanosarcina siciliae C2J chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2769988 37 100.0 34 ..................................... GAAATACCGCTACCATAAAAGAAACAATTAGAAA 2769917 37 100.0 38 ..................................... TTCAATCTGTTCTAAAGAATAAGGAATTTCAACCTCTT 2769842 37 100.0 36 ..................................... TTTTTAGTTGTTTTTAGCTCTGGATATGCTCCACAT 2769769 37 100.0 36 ..................................... TCTACAATATCGTCTTTGCAGTACACAATCTTTTAT 2769696 37 100.0 35 ..................................... TTTGATCAGATTCAGGAGACTGCCAAGTACAATAT 2769624 37 100.0 38 ..................................... AATAATATTGATTTCACGACATTCATTGTCATTCCTCC 2769549 37 100.0 35 ..................................... TTCTGTTAACAGGCCTGGTTTATCTCTGCTATTTT 2769477 37 100.0 36 ..................................... TTAAACTGATTGCCAACAATACAAGCATCACCGAAA 2769404 37 100.0 35 ..................................... TCTATGTTCATTTCTCCTTCTTTCAACGTACATTC 2769332 37 100.0 37 ..................................... ACCATGAAGAGGCTAAAATCGGATAAAGCAACGGTAA 2769258 37 100.0 36 ..................................... AAAATAGTATTTTCTAGCAGAAATATGGCGTTTTCT 2769185 37 100.0 37 ..................................... TACAACTTCGTTCAAGGTAGTAGGAAACGGATGATGT 2769111 37 100.0 36 ..................................... CTCTTCATCTACCATAGTATATTCATCCTTGTAGTC 2769038 37 100.0 36 ..................................... CACATAGATCTGCTACAGGGAAAATTCATTTTTATA 2768965 37 100.0 34 ..................................... TGTAATTCAAGGAGCGGCCCTCTTTCGTAATCCT 2768894 37 100.0 38 ..................................... TCCAATTTTTGTTGATGTTTCTCATTTCTTGTTCTCCT 2768819 37 100.0 37 ..................................... CAAAAGGGAAACAGGTTAATATTCCTTTACCAGTGTC 2768745 37 100.0 34 ..................................... AAAAAATATAAAAGAGAATAGAAAAAAAAAGCAG 2768674 37 100.0 38 ..................................... TTACTTCCTGGTACGATTGGCGGACTCTGTATTTCGGA 2768599 37 100.0 37 ..................................... CTTTTCATCTTCTTCAAGAACAATAATGCTCTTACCA 2768525 37 94.6 0 ............................A......T. | ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 99.7 36 CTAAAACAGCAACAGCCACTAAAACAAGGATTGAAAC # Left flank : TTATCCGAATTTTGGAAGTTTGTATCCCCGTTTTCCTGCAGAATCACGCTTATTCTCAATTTGACCCCTGAATTTTCAAAAAAACAATATCTACATAGAACATCATAAAATACTGTTTTGAAGTATTTCTAAAGAAAATTTGGATTTTTCTGAGGAGTCCGGATGAAAAATCCACTATGAAGCGGAGCTATGAACTTCGTATCAGAATTATAAATGTATCCCGGATACCCTACTTTACAAATGATTTTAAGGAAGTGTACAAATATGTACATTGTCAAAAAAATAATTTCGCTACCAAGCAGTCGAAAATACAAAAGTTTATATGGTATCCATCCTTATATGCTCCTTAGCTAATTGTCGATGGACAAATTTAGTTAACAAAAATGGAAGTAAGCAAATTTTAAATATTATACAGTTTAAGCAAAAAATAATTTGCTTGCTATTGTTTTTTAGATTTGGAATTATTTAATAATTTGCTGTAAATAAGGGAAAACGACCCT # Right flank : CTTCTTTCGTTTTTGTATATTTCAAAAGCCTATTTTTATTGAGAAGTAGTTCACGAAAAAGTATCGAGTGCTTTAATTCGGAAAAACCCCGAATTCTTCGCGGCTAAGTATATCAGGCTCTGTAGACGACTGGAAATTAAGAACCATTTATGGAGGTACCTGATATCCAGAACCAGACTTTAGCCGAGATTCAACTGAAACTATACAACAAAGCGAAAAGGAACCCGCAAAAACGGTTCAGGAAGCTAAAAAAATACCTTTTGAAAGACGAGATCCTGTACACTGCCTGGAAGAACCTGAACAGGAACACAAAAGGCACTGGTTTTGATTCTTTAACTGTCCAGCAGGTAGAAGCTTCAGGAGTCGAAAACTTTATCCGCTCTGTAAAGAAGGAGCTTGAAAAAGGCCGGTATACTGCCGATGCAGTGAAAAGGGTTGAAATCCCCAAACGAAACGGAGAAACAAGACAGCTTGGAATTCTGACCTTAAAAGACCGGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAAACAGCAACAGCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 2822675-2819195 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009508.1 Methanosarcina siciliae C2J chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2822674 37 100.0 36 ..................................... TAAAAATAGATATTATAATAAAAAGTGGGGCTGATA 2822601 37 100.0 32 ..................................... CCTTTCGCCGTTACCACTTGGCTATCGTAACA 2822532 37 100.0 37 ..................................... ATCCAGTGCATTAGACTGTGATCAGATAGTTCTAATG 2822458 37 100.0 38 ..................................... GTTCTGGATACACACAATCCATCAAGTACCTGTACGAA 2822383 37 100.0 40 ..................................... TACACGAACAGTTTGATGAATCTAACAAAGATATGCATGA 2822306 37 100.0 34 ..................................... TGACGAGTCCGACTGGTGTGACGTGGACTTTGAG 2822235 37 100.0 36 ..................................... AAGATCAGGATTATCTGGTGTGAATATGCTCCGGTG 2822162 37 100.0 35 ..................................... TCGTAGTATTATCAATTGACGGAGACGTTGTATAT 2822090 37 100.0 33 ..................................... CAAATGTGCAGGTCTACAGGCTTTTGAACTCAG 2822020 37 100.0 36 ..................................... GTCTGGTGTCATCAATCAGATCGATCGAAAATTTGA 2821947 37 100.0 35 ..................................... TCGAAGTCCAGTCAATCGAACCGAACATAAATAGT 2821875 37 100.0 37 ..................................... GTCGGCGGATTGTCATAAGAAATATCAGCAAACTCAT 2821801 37 100.0 35 ..................................... AAGTTATCAGCAAAGATGGAAAGGACATTACAGAA 2821729 37 100.0 37 ..................................... TAAAGAATTCCTGGCCTTCTCTGATAGGAATTAAAAA 2821655 37 100.0 36 ..................................... CTGATATCGTTTTTGTGGGAAATGAATAATGTAGAA 2821582 37 100.0 37 ..................................... TGGGTAAAAGGAAGAAGATGTTAACTCGTTCGTGGTT 2821508 37 100.0 37 ..................................... TCTCGGATCGATGGCGGCGGCATACCTATCAACAATC 2821434 37 100.0 37 ..................................... ACATATCCCAGATTCCACAAATCGAAATCGAATATTT 2821360 37 100.0 34 ..................................... CCGGATCGTCGGTTCATTTATCAGCGGCGGCGGA 2821289 37 100.0 34 ..................................... TAATATATTTCGCGGGTAACAGCCGCTCCACCAC 2821218 37 100.0 37 ..................................... ATGTACATGTACATCTGTACATCGTACAGTCTAAAGA 2821144 37 100.0 36 ..................................... TAGAAAGGATTACACCGTGAAATTCTCTTACGACAT 2821071 37 100.0 36 ..................................... AACGAATTGAAATCTGGTCTATGATCAAATATAAGG 2820998 37 100.0 36 ..................................... ATTCAATAGTCCTCCACGCTCTATAATGATATGCTC 2820925 37 100.0 34 ..................................... CTATACTCTGTGTGCCGCCTTCCCCAAGATCGAA 2820854 37 100.0 38 ..................................... TTCACATGGTACGGTGAAAACGCATCAGTCTCAAAAAT 2820779 37 100.0 37 ..................................... CACAATGTTCTTTAGTGATGGCTCAAGTCTTGTTTTT 2820705 37 100.0 36 ..................................... TAACACGGCTGACACCCTAACCGTGATGGACTGTTG 2820632 37 100.0 35 ..................................... CTACTACTCTTGATCTAGGAAAGGTAAGAAAAACT 2820560 37 100.0 40 ..................................... TTTGATACAAGTCCTGAACTTTCAAAACCATCTGGAAAAA 2820483 37 100.0 35 ..................................... TATTTTACATTGATATTTTTTGCATTTGTGGCCAA 2820411 37 100.0 37 ..................................... TTCCATGCTTCAATAAAATCATCAGCAGTCATAAAAT 2820337 37 100.0 40 ..................................... ATCAAATACTGTACCGAGTTCTTGTTTTTGGTTATATGGT 2820260 37 100.0 36 ..................................... TCTTTAGTTAAAATAACATTTTCCAATATTTTACTT 2820187 37 100.0 34 ..................................... TAATTTTCTGCTGTCTCTTCCCAATCAATAACAA 2820116 37 100.0 35 ..................................... TGATACTGTATCTGAGATGGTCGCCGCAGGTCAGT 2820044 37 100.0 37 ..................................... ATATTCATGATAATGTCTGTGACGGCTCGATGGTAAA 2819970 37 100.0 34 ..................................... TCCGTTGTTTCGTTTTCTATAGGGGTATTGATAG 2819899 37 100.0 39 ..................................... AACGATCCGTAGTCCTCAAACCTTGCTCTTAGAACATTA 2819823 37 100.0 37 ..................................... CCAGGTCCTGACAGTGAGCCGCGTTCATGGGTGGAAG 2819749 37 100.0 37 ..................................... CCTGATCCTGTAGCTCCACATAAAACAGCTTGTTTTG 2819675 37 100.0 36 ..................................... TCGCTCCTTTGTGCTGATACGTTGTTTATTCCTCCA 2819602 37 100.0 38 ..................................... TTCTCCTGACAGGTCTTTGCAACCTTACACCAAAAATC 2819527 37 100.0 38 ..................................... TCTGTCATCGTTGCCGTGGTTATAATTGGTATTTTATT 2819452 37 100.0 36 ..................................... GATGTTTCCTCAAATGTGTACCACCAAAAGATGTAG 2819379 37 100.0 37 ..................................... ACGACAACGGGCAGCCCATAATTACTGAAACTCCCAC 2819305 37 100.0 38 ..................................... CCACAGGAAGCGATACCACTCGCTTCCATAACCGGAGT 2819230 36 94.6 0 ..................T............-..... | ========== ====== ====== ====== ===================================== ======================================== ================== 48 37 99.9 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CGGTACCGTACTGCCTGAAAAGATTTTCAAATAACACCTTCATGGTAAAAAACACCGCCAAAGTAATATTTTTTCTATAATTTTTATTATTAAAAGACTTAAAACAATTTTTCTATAAATACTTTCCTAAAAAAACGTGTTACGAATTTATTTGTTTCTTAAATATATATAACACTCAAAACGATATTTTTCTCTCTCATCAGCCTTTTGATTGACAGAAACTATAAATGCTGAAAATGAGCCTGAAATTTGATGGTTCCAGAGATTATCAAAAGGCATTATGCAGTAAAATTAAGGTCAAAACCCGAACCCTACCTTGACATATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTCCCAAACCACTAAAAACCCCGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTGACCCGAAAAAAGGGGTGATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TAATATATCACAAAATCGAGAAACTGTCTCTTATCATTCGTTAGCAAGACGGTTAAAAGTTTATTCGGTTTTTTGTCACTTCACCTTTTAAGGGAGCTGAAGCTTATCTTTTGTGCCTTTTGCTTATAGTACCTGTACTTTTAATATTTTTTAAGCACTATAGGTAAACTTTTCATACTGGCGTGGAAATATAAGCTATTTAAATAAGAGAAGGGGGACTGATGGAGTTGATTGCTTCCAAAATTACTGCTGTTTTTTCTCTGGTAGCGTTTGCATTTATTCACAGCCTGACTGCTAGCCTGCCTTTCAAACGCCTGGTCATGAGAATTGCCGGTCCCGGAGCGGAAAAGCTCTATCTGCCGGCATACAGCCTTACTGCTGTGCTGACGATACTGCCACTTGTCTATCAGATCTACAAAAATCCGGGGCGGGTTCTTTACAAAATACCTTCGCCCTGGCGCTGGCTCATGGTTGGGGGGCAGTTAATTGCCGGAATGCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 3 4287834-4282906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009508.1 Methanosarcina siciliae C2J chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4287833 37 100.0 37 ..................................... TACATAACAAGGAAGCGAGAAGGGCAAAAATGTTATG 4287759 37 100.0 36 ..................................... TAGGTATAGGATACCGGAGGGTTAGCTAGTTTTTCA 4287686 37 100.0 34 ..................................... AGTTTGCCGGATGACGACGATGAATGAATATCAT 4287615 37 100.0 36 ..................................... AAAGTCTGTAATCATCTGGGTTTTCACCTGCATCTC 4287542 37 100.0 36 ..................................... GCAAGTTCCATTGCGGAGTTGCTTGTCTGTATATCC 4287469 37 100.0 40 ..................................... AGCGGTGACATTAACTCCCCAACATGGACATTCAAACCAG 4287392 37 100.0 35 ..................................... AATAGAGACAGATTCCAGTACCTTCTTCCAAGAGT 4287320 37 100.0 36 ..................................... TAGTAGCTCATTTTCTGTTCACCTTTTCATCTTTTC 4287247 37 100.0 36 ..................................... TATCACGAAGTTCGTGATCCGTGAAACTGATTTCCT 4287174 37 100.0 36 ..................................... TTTTTCCCCCCTTGTCCATCCGAACCTCGCACCGAT 4287101 37 97.3 36 ........A............................ ATCTAATTCTGTGCATGTCACAGCAACTACTCAACA 4287028 37 100.0 37 ..................................... TCGCATATAGCATATCGATTTCAGTCGTCATGATCAT 4286954 37 100.0 37 ..................................... TTCCAACTCCTTCATTTTTTCACATCTTTCGAATTCA 4286880 37 100.0 36 ..................................... CGCCAAGACATTATTTGGAGTAAAAACAATCCGATG 4286807 37 100.0 35 ..................................... ACAGCAGGCAGCCGAGAAAGCAATTTCAGAATTTG 4286735 37 100.0 38 ..................................... ATTGTGGAGGATAATAACGTGCTACACATCCAGGACAT 4286660 37 100.0 36 ..................................... TATTCGTTTGCTTTTCCCCACGAAGTAACAACAGCG 4286587 37 100.0 37 ..................................... AACATCCCTCAAACCAACTTGCTTAAAACAGCGTCTT 4286513 37 100.0 36 ..................................... TTGAATATATCACGGGGTTGAACATCCAACGCCGCG 4286440 37 100.0 36 ..................................... TAAACGTGGGCGGATATTCAACCGACACGATAACCG 4286367 37 100.0 38 ..................................... ATGAGAAACAAAGGTTTGAGCGGAAAAGGCTCTAACTT 4286292 37 100.0 34 ..................................... CTTTCACTACTCGCCAATCCGGCTTAACTATCCC 4286221 37 100.0 34 ..................................... CATTCGGGGACGGCGTGGACTATGTACTCATCGG 4286150 37 100.0 33 ..................................... TCAAACAGTATTGCATCATACCATTGTTTTTTT 4286080 37 100.0 35 ..................................... CCATCAGAAATAGCATACCCGCCATTCGAAGAGGA 4286008 37 100.0 37 ..................................... GCATAGATTTTTCTGATAGCGGTCATATCAAAAACCT 4285934 37 100.0 36 ..................................... ATCTATATTGGTCAAGGGAAGGGGCTTCGCCCCTTT 4285861 37 100.0 34 ..................................... TCATGAGTTGGGAGGCTCCCCCCGTGACTGCACA 4285790 37 100.0 36 ..................................... TTATCGTTGAAAATCCACAGGGCCCAAATGAATCGA 4285717 37 100.0 36 ..................................... TGCTAAGACGATTCTGCAAAATTGGGGTAAGAATAA 4285644 37 100.0 35 ..................................... TATTCTTGGTGAATGGTGTCTAGCTGAAGGCGCAA 4285572 37 100.0 35 ..................................... AAGCTTGGTCATGATGCTCTTTTCGCGCAATACTG 4285500 37 100.0 35 ..................................... CAATCATGAAACTGAGATTCTGAAGGCAGCAACTA 4285428 37 100.0 36 ..................................... GTCCTTGTCTTTTGTTGATCGGCCTGAGATTATCTG 4285355 37 100.0 35 ..................................... TCTGGGATCGATGGCTGCCGCATACTTATCTACAA 4285283 37 100.0 34 ..................................... ATTTCCTTCGTTGCTGTTTGTAGGTACTGCCTAC 4285212 37 100.0 35 ..................................... GGACTGCCATCTGCGAGTATGGATACCATAGACAT 4285140 37 100.0 37 ..................................... TTATAGGGGGATAGATTACGGAGGTACACTGGCATTT 4285066 37 100.0 35 ..................................... TGATGGACTGAATCATTGTATGAAGTTCTCTGTGC 4284994 37 100.0 36 ..................................... TCCAATCGTAATACGAAGAATTAAAATACGATTCAA 4284921 37 100.0 37 ..................................... TCCATGCGTTATTGGTCCCCGTTGAAAATGGATCTTG 4284847 37 100.0 35 ..................................... GACTTTTAAACGTTGACGGCCTTGCAAGTCTGTCA 4284775 37 100.0 38 ..................................... AAAAGATGGACGATTTCGCAGAAATGAGAACTGCGGCA 4284700 37 100.0 36 ..................................... AAAGATACTTCTTCTTCTGCTATGCGTTTAGATGGC 4284627 37 100.0 37 ..................................... GAGGTATTGGTAGTATTAAGGGATTTGCTCAGGGTAT 4284553 37 100.0 41 ..................................... AGCGTGAGCAGAAGGTCCTAAAGGATTTCGATGAAAATGAG 4284475 37 100.0 33 ..................................... TTAAGATAGCCTAAAGATAGGCTATCATTTCTA 4284405 37 100.0 38 ..................................... CATTATGCCTCTTTCGAATAGCAACTCAGTTAACTCTT 4284330 37 100.0 36 ..................................... CTTGGAGGCACAGACTCGACAATTGGGGAATCTCAG 4284257 37 100.0 36 ..................................... TAACTGTACTACACGTACAACATTAGACGCAGCCGG 4284184 37 100.0 37 ..................................... TTGTCAGGCTAATTCGTCCGTACAGGCTACTTTGCAG 4284110 37 100.0 36 ..................................... ATCTCTTGGGGGTTTCTAATGAAACCTTCCCCTCGT 4284037 37 100.0 36 ..................................... TTTTTTATCTCGATATATACAATATTGAACGGGATT 4283964 37 97.3 32 ........................T............ CAGTATGACTAAGACGGTAAGGTTGACTCCCA 4283895 37 100.0 35 ..................................... TTCAACAATTCCTTAATGAAGTCAATCTGGTCGTT 4283823 37 100.0 35 ..................................... GGTACATATTGGAATGCTTATAACAGTTCCGGTAC 4283751 37 100.0 35 ..................................... GGAGCCTCTTCACATGGACATGATACAGAATCAAG 4283679 37 100.0 38 ..................................... TTAACAAAAGATGGCAAACTATGTTTCGATAATGAAAG 4283604 37 100.0 38 ..................................... CCCCTCAATAGGAAAGTTCTGACTCTTGAAGATCTTAG 4283529 37 100.0 37 ..................................... TTCTTCATCATTCCCTGGATAAGGTTACCAATCATTA 4283455 37 100.0 37 ..................................... TATCAATCATGCTGTCATTCCCTCCAGCGATCCCCTC 4283381 37 100.0 37 ..................................... TCCCATACTTCCTGTTCGTCGTCCCAATCATCGTCAG 4283307 37 100.0 35 ..................................... TTAGAAGAAGAGGAAAAAAAGGCAGATGAGAATGA 4283235 37 100.0 38 ..................................... TTGGCCTGTCGTCGTAGTGCACATTCACCTTTCATTCA 4283160 37 100.0 37 ..................................... ACCGGACTTATCTCCGGTCGGCGGATTAAAGCAAAAG 4283086 37 100.0 36 ..................................... CATTCTGACCAAATCTTATGGCGGTCGTAATATCGT 4283013 37 100.0 34 ..................................... AATATGGTAGATCTTACAGACGAACAGAAAAAGA 4282942 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 68 37 99.9 36 ATTCGAAAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGAAGTTTTTATTGCTTCAAAGCAGCACCATATCAAAGGGATCGTGGACGAAGTACTGTTTCTTGAAGACGGAACTGCTGCCCCTCTTGAATACAAATTTGCCGAATACAAAGACAAGATTTTTAAAACCTATAAATTCCAGCTGGTTTTACAGGCGCTTTTGATCCGGGAAAATTACAATATTAAAGTAAACCGGGCATATATCTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAGATGGGGATTACCAACTCTGATTTCAAAAAAGCCGAGAAAATTATCGAGGAAATAGTCGAGATAGTTCAAAAAGGCTTATATCCAAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTGTCTCCGAAAAAGGGCTCATTTCAGACCTTTTCTGGCCAAATAACGGAAAATTTTGCCCT # Right flank : AATTTTTCTGTTGATACTCTACAGGCTCTAGTTTGGCAAATTTGAATGTACATTTATTTATCATATTATAACATATTATAATATATGTCTACGATAGCTATAGATCCGGATGTAAAGGAATCACTTAAAGAGTTAAAGTTAGCTCCGGAAGAGTCCTATAATTCGGTAGTTAAAAGACTTATTAGCGAAATTAAAAAGAAAGAAGACTATAAACCTATGTTTCCAAAAGAAGGAAAACAAGAACCTGAGGAATCCCATATAAAAGATTTTAATGCCTGGTTAGAAAAAAAGCTGGTGGAAGATAAGAATATTTTAGATGCACTTGGAAGAAAGTGATGCTTTGATCAGTTTAATTGAAATTTTGAAAATTCATCAAATGGTCATAGATTACGATAAATTTAAAGATCCGGATGATTATACCTCTGCAATACGTTCTTTAGCTACGTTAGAATTAATGTTTGAATTTTTAATCAAAGGATCCAATACTATTTTCGAAAATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAAAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //