Array 1 59096-59391 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDJH01000023.1 Clostridium perfringens strain 13/0815-C NODE_4_length_232848_cov_49.6655_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================ ================== 59096 34 94.1 32 ..GC.............................. AATTTTCTTTCATGCCAATAATTATTTTGTAT 59162 34 100.0 32 .................................. TAGGTAGTAGTAACTCCCCCTTGAACATAACT 59228 34 97.1 32 .C................................ ATAATATATATACCTTCTATATATTAGGAGAA 59294 34 100.0 31 .................................. GTTAGTACGGTTGTTATCGCCAATAACAATT 59359 33 88.2 0 ..G........................-.C..C. | ========== ====== ====== ====== ================================== ================================ ================== 5 34 95.9 32 AAAAATTTAACTTTAACAAGTGTTGTATTGAAAT # Left flank : TATCTAAAATTAAATCATTATGTTTAAGTAATAAAACCTCTCCTTCTTTTACAAGGTCTAATACTCCCCCTATATTTAATTTTAAAAGCTCTAAATCTAAAGGATTATTTAAAAGTATCTTTTTCATTTTTTCTCCTTTCAATTTAAAGTAATTTCGATATCATTATATTATTCTACTTTGACATTAGTCAAATAATAATGATTGCATAATTTTAGATATTTTCTGACAATTCAAAATTTTCATATATAAGTTTACTTAATAAACCTATATATCAACTTTTACCGTAATTGACAATAGTCAAATAAAAATATATAATTCTTTTATAAGTTTTACCAGTAATTTTTAATATAAAATATAGTAAAAGCATTGATACTTCTTTATTAGAAGATTACTTGCAACATTTATAATATTAAGTTTATGATGATTGGTAAAATTCAATACAAATGTAGAATTATTCTAACTTGTAAAATTTTTTGTTTTTTAAGAATGGCTTATTTCC # Right flank : TATGAGAAATAGTAATTATATATCTATATAGTTGCTATTTTTTTATTAAAAAAAACTACTAAAAATATAAAAAATAAATTATAAAGGGGACTACATATGAAAAAAAATAAAATAAGAAAAATATTAAGTAGAAAGAGTAAAACTTTAATAGTAGCAGGTCTTGTAATTGCTTCAGGTACTTTCCTAATATCTAAATTAGCATGGAAAGGTAAAAACATCACTAATTCAAATAATAACAAAGTTACTACTGTAGGTAAAAAAATAGATAAATCTTTAGATGAATTGCAGACAACAAAAAACAAAGAAGTTTCATGTAGTATAGAAAATCCATCTGATTTAGCTGATTATGAATATGCTGTTATAAACGATGAGCTTATTGAAAAGCAAATAAAAGATAGACAAAATAGCATTGACCCCGATGGTTGTACTGACCTTCGTGGTAGATACAATAATGAACCTTCCTGTGGTTCATGGAAAGATGACTTCAGAAAAAGAATGAC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAAATTTAACTTTAACAAGTGTTGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 142604-143216 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDJH01000027.1 Clostridium perfringens strain 13/0815-C NODE_6_length_174164_cov_49.2829_ID_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 142604 30 100.0 36 .............................. GTCGGAAAACTCTTATATTTCCTACTATTAAATTCA 142670 30 100.0 36 .............................. AAAAGGTATAAGGGAAGAGTTGTTATTCATATATAG 142736 30 100.0 36 .............................. ATACTCCTAATTTTTATATAAAGCATATGAAAAAAA 142802 30 100.0 35 .............................. ATATAAAATAAAAAAAGATGTTTATTATGAAGAGT 142867 30 96.7 35 .............................C TTAGATACTTCTTTCAAAAAGTACGTTAATATTGT 142932 30 86.7 36 ...........G...TA.C........... TATTGCAATATTAATTTAGAAGTAATAGAAGATGAA 142998 30 100.0 36 .............................. TCTAAATACTGGTTTATGTATTTAGCCTTAACTCCA 143064 30 100.0 31 .............................. AGATAAGAGCGTTTCAGAAGCTTTAAGCTCT 143125 30 96.7 33 ...C.......................... ATATGCAAAACACCCACTTAGGTGTAAAGAAAA 143188 29 86.7 0 ...............TA........-..T. | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 96.7 35 ATTTAACTTTAACAAGTGTTGTATTGAAAT # Left flank : CTCATTTCAGTATATAATTTAAACTTTATTCAAAAAAAGAACAACTTAGATACAATACCTAATGTTGTTCTTTTTGATTTATATTTTAATAATTGTAATAACTTGGGGGAAGCTATTGCCAAAAAAAATATAAACAACTCATTTTATTTAACTTATAATATTATGAATTTCTGACTTTATTATAATTTCTTTTTTGACTATTGTCAATAATAAATTATTATCTAAAAAATTATAATTTTCATATATACAATTACTTAATAAACCTATATACATTTCAAACGTAATTGACAAAATTATTGTTTAAATATATAATTTTTGTATAAGTTTTACCAGTAATTTTTAATAAAAATTATCTTAAAAGCATTGATATATCTTTATTTAAGCACTATTTAAGGCTTTTATAATATTAATTTTGTATTGACTGGTAAAATTTAATATAAATATAGGCACATTCTACTTTTAGAGTTTTTTTATTTTTTAAGAATGGCTTGTTTTCAAGT # Right flank : TATGAAAATAGCAATTATATATCTATGTAATTGCTATTTTTTATTTTTAAAGCAATTTACTAATATAAAAAATTATAATTTTAGTATTTCTTTATATAATATATAGAAACTAAATTATAGAAAGGATTAAATATAAAAAAAATAAAATACAAAAGATAATATATAGTAAAGGTTATGTAAGTATAGAAACTTTAATAGTAACAGGTCTTATAATAGCCACAGGAGCTTTCCTAATATCTAAATTAGTACTGAAAGGCAAAGATGTTGCTATATCAAATGATAACAATATGATTAATGCAGGTAAAGTTATAGATAATACTTCATTCAGTAATAATACTTCTGAAAACTCTATAGCTAAAATTCAATCACCTATCAAAGAGGAATCTACACATAATATAGAAAATACATCTGATTTAGCTGACTATAATTATGCTATTATAGATGATAAACTTATTGAAGAACAAATAAAAATTAGAAATAGTCTAATCGATTCAGGAGAT # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //