Array 1 5604-7706 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOA01000066.1 Salmonella enterica strain NGUA-2_S2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5604 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 5665 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 5726 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 5787 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 5849 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 5910 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 5971 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 6032 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 6093 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 6154 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 6215 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 6276 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 6337 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 6398 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 6459 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 6520 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 6581 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 6642 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 6703 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 6764 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 6825 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 6886 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 6947 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 7008 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 7069 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 7130 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 7191 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 7252 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 7313 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 7374 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 7435 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 7496 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 7557 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 7618 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 7679 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25339-27259 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOA01000066.1 Salmonella enterica strain NGUA-2_S2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25339 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 25400 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 25461 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 25522 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 25583 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 25644 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 25705 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 25766 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 25827 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 25888 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 25949 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 26010 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 26071 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 26132 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 26193 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 26254 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 26315 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 26376 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 26437 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 26498 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 26559 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 26620 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 26681 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 26742 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 26803 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 26864 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 26925 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 26986 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 27047 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 27108 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 27169 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 27230 29 100.0 0 ............................. | A [27257] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //