Array 1 2804597-2803695 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061336.1 Ruminiclostridium herbifermentans strain MA18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2804596 30 86.7 37 C..G.C..T..................... AGTGGTATTTCTGATTTCTTTTCTTGCTCTCTCATAT TT [2804586] 2804527 30 100.0 39 .............................. CAATATGGCTCTCATAGTACGACTTTTGTCTAATAAATC 2804458 30 100.0 35 .............................. GACATAGTATCATAGAAAACGGTGTAGATTTCGTT 2804393 30 100.0 37 .............................. ACGTATAATAGCGTGAGTAGAAATGATATTGAAAGAG 2804326 30 100.0 37 .............................. ATTTCAATATATCCGTCTACGTTTACCCTTACCGAAC 2804259 30 100.0 38 .............................. TTTTCTCCATTCTTGCAATTTGAGTAGGGCTTCTTTCT 2804191 30 100.0 37 .............................. ATGTATGGAACATTCACAGAGCAACAGGCTCTGGTGA 2804124 30 100.0 35 .............................. AGCCTTGAAATGAAAAAAGAGAAAATTGCAAACAG 2804059 30 100.0 38 .............................. CGAAAATTCTATTGCTAGCTGCAGCAACAATTATTCTG 2803991 30 100.0 37 .............................. ACGTATAATAGCGTGAGTAGAAATGATATTGAAAGAG 2803924 30 100.0 37 .............................. AATTCTTTTGATTCCCTTCCTCAAGTTCATTGTTTTG 2803857 30 96.7 38 .................A............ TCATTAGTTTTTTATCTATTTCTATGTCTATATTTTTG 2803789 30 96.7 36 .................A............ TCTTTTGCTATTTCTTCAAGTCCTTTGACATCCAAA 2803723 29 90.0 0 .................A.......-...T | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 97.9 37 GTTTAGAGAATACCTATGAGGAATTGAAAC # Left flank : TTTTCTTGAAAGAAATGAGAATATAGTATTTCTTGGTCCAAGTGGTGTTGGAAAGACTCATCTGGCAACATCAATAGGAATAGCTGCAGCAAAGAAACGTACTAGCACATATTTTATCAAATGTCATGATTTATTGCAGCAACTAAAGAAAGCAAAACTGGAAAACAGACTTGATGTAAGACTCAGACACTTCTGCCATTACAGACTACTTATCATTGATGAACTTGGCTACTTACCCATTGATAAAGAAGATTCTAATATGTTTTTTCAGCTTATAGATATGAGATATGAGAGAAAAAGTACCATTCTTACAACAAACATGAATTTCAACGAATGGGATGGTGTATTCTATGACGCAGTTGTAGCCAATGCAATACTTGACAGGGTATTGCACCATGCACATGTAATATCTATATCTGGAAAGTCATACAGATTAAAGGATCATATGAAGCAAGGAGAATAGTTGTACATAATTATTTAATACTTTTTATACATTTTTC # Right flank : TTGACTTTATATGGAAATACTCAATAAAACAGATTATTTAAATTACTCACTTTTGGATAAATCTACTGTTGGAAAATTTACCATTAAAGAATGTATATATAGTTTGAGAGTATACCATATGCGAATGTCACTTGATTACCAAATATTACTGCCCAGATAACACCCGCCACAGCCCTCTGTTACATTTTCTTAATTTGAATAACCAAATTGAAAAATATATAATGAATTATAGGTATAAATACTCAGTATATATTTTGAAAAATTTGGAGCTGATTATATGAAGAAATTGAAAGAAATGCTTTCAATCGTACTTAGTGCTGCATCGTTATTTGGAGCGTCCTTACCTGCCTATGCTCCTAGCAATTTAGTAGAAGAGGTTATCACTACATATATCCCAATGAGTATTATGAATCAAAGTACTAAGTATGTTGCGTTAGGAGATTCTATTACAACGGGATATGGTTTGGAGAACTACAATAGTAACGATGTAAAGAATAAAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAGAATACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 2814091-2806786 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061336.1 Ruminiclostridium herbifermentans strain MA18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2814090 30 100.0 35 .............................. CGTAAAACGCGCGTCGCTCCGCTTATGACGCGCGA 2814025 30 100.0 38 .............................. TAGGTAAGTACTAAATGAATTTGCCCTAAATCATTTGC 2813957 30 100.0 34 .............................. TTCCTATTTCAGCATTTATTCTTCTTACATGTAC 2813893 30 100.0 39 .............................. AGTGTTTATGAGCAAGCAATGCTCCCATAGTTGATTTAC 2813824 30 100.0 35 .............................. CTAAACCTACAATTCCAGCTACAATACTTAAACAA 2813759 30 100.0 37 .............................. GAATTATAAAGCCATCATCCAATAGTGTAGAAATTCC 2813692 30 100.0 36 .............................. GCTGCCTGTCCTTCTCTCTTACTATCAGCGAAATAC 2813626 30 100.0 36 .............................. ACACCTACATACTGCATACAAGGCAACTGCATAGAC 2813560 30 100.0 35 .............................. ACACCGGAACGCATGGAGGGCATGGGAATAATGTT 2813495 30 100.0 38 .............................. AAAATATGAGAATATGGCTAAGACTTGGCTGGATTGAA 2813427 30 100.0 36 .............................. AAGAAGTATTAGAACCTAGCACGAAAGAAGGTGATT 2813361 30 100.0 36 .............................. TTCAGAGTTTAGTAAAACTAGAAGGTCAAGAAGTTT 2813295 30 96.7 36 .................G............ ATGACTGATTTAGAATTGTTACAGCAAATTCATACA 2813229 30 96.7 36 .................G............ TTAATAAGTCTGCTTTTTATTTTTCTGTATTCGGCT 2813163 30 96.7 36 .................G............ CTGGAGTAGTAGGTGCAACAAATATTGCATGTAATG 2813097 30 96.7 36 .................G............ ATAAATAAAAGGAGTGAGGCAGGATTTTCTGAACGA 2813031 30 96.7 34 .................G............ ATAAATAAAAGGAGTGAGGCAGGATTTTCTGAAC 2812967 30 96.7 36 .................G............ TTAATAAGTCTGCTTTTTATTTTTCTGTATTCGGCT 2812901 30 96.7 36 .................G............ CTGAAGCAAATACATATACTGATTCAGTTACAGGAG 2812835 30 96.7 37 .................G............ CTAAAAGCATTATAAAGATTGCACCAGACTTGTGGGA 2812768 30 96.7 35 .................G............ TATTGCTTTTCAACAGGAATATTGGATTCCTGTGT 2812703 30 96.7 37 .................G............ ACATATATTTTCATATCGCTTGAAATAATGACTTTTC 2812636 30 96.7 37 .................G............ TTTAATTTTTCTAGACTCATGCCAGAAAATACACAAT 2812569 30 96.7 35 .................G............ GTTAAATATCCGTTTATATGGTCTCCAGTTCTTCC 2812504 30 96.7 36 .................G............ ATATGATGTGCACCATTTAAATCCAAAAATTCTGCT 2812438 30 96.7 36 .................G............ ATATGATGTGCACCATTTAAATCCAAAAATTCTGCT 2812372 30 96.7 35 .................G............ ATATTTGCCGCATTAAGCTATCTTTAACGCCGAAT 2812307 30 100.0 35 .............................. AAATATTTGTGTGACTTCCCACGACCTCCGGTTGG 2812242 30 100.0 35 .............................. AACCGTTCATAACGGTCCTGTATCTCACGTAGTCA 2812177 30 100.0 35 .............................. AACAATATTTTTGAAGTTAACTACAATTTAGGCGA 2812112 30 100.0 37 .............................. ACTGTGTTTCAGCGTGTTTAAATGTGTTTAGATTATA 2812045 30 100.0 37 .............................. ATAACTATGGATTTTTTTTCCTGCTTCCATTTAGTTT 2811978 30 100.0 37 .............................. TTTCAATTCCACAAGATATACCTTACACAGGAGGGCT 2811911 30 100.0 37 .............................. GACAATGAATGGCTTAATACAATAAATTATTTCTTGC 2811844 30 100.0 36 .............................. CCCTCCACGTCTGAAGGTGCGCGCACTTTCTTTAAA 2811778 30 100.0 36 .............................. ATCAATACTTGTCTTTGCTCGTCGTTTTTGGCGAAA 2811712 30 100.0 35 .............................. TAATTTTTGTCTGTAGGATGGCTTAAAAATTGATT 2811647 30 100.0 36 .............................. AAGCAGAAGAAACCCCACCAGAAGAGAGTTAGTATA 2811581 30 100.0 38 .............................. ATAAAAACTGGTTCGATTTTCGTTTTTGAAACAGAAAA 2811513 30 100.0 35 .............................. CTGGAATTAAACCAGTAGGATAAATAGAATCATTA 2811448 30 100.0 37 .............................. TAATTTATCGAACTGTCCAAGACCCCCTTTGCACTAC 2811381 30 100.0 36 .............................. ACATCTACTACACCTCTATTTCTTCTATATAATCTA 2811315 30 100.0 36 .............................. AAATCTGAAGCTTTCTATTTTCTATATGGAATGCGG 2811249 30 100.0 36 .............................. TCCTTTTTCATAGCATTATAAACACTATTAATAAAT 2811183 30 100.0 36 .............................. TAACTTTGTATATATAGGTGGAAGTTTTTTTCAATC 2811117 30 100.0 37 .............................. CAGCTTATGTAGCTTTAATTGTTAATGATAAAAAATT 2811050 30 100.0 34 .............................. AAATAGTATAGTTATCATTTAGTATAACGCTTGC 2810986 30 100.0 36 .............................. GAGTATGGACATGCTAAACAAAATGGTGGACGTGTT 2810920 30 100.0 37 .............................. TATTCCTATATGTAGTACGTTTGCTGTAATAGATTTA 2810853 30 100.0 36 .............................. AAATTTTCTTTGTAATATGCTATACATATATTTATA 2810787 30 100.0 37 .............................. AAATTTATTTTGAAGGTTAAACCCTCTAGCAAGCCCA 2810720 30 100.0 35 .............................. AAAGATAATACTGTTATATATGACAGTGGAAATAT 2810655 30 100.0 36 .............................. TATAACCTATTACATTTTCAGTTGCAGAATATCCAT 2810589 30 100.0 36 .............................. TTGTCCATAGTACTCTTTGTAAAGCTGTGCAATTTG 2810523 30 100.0 36 .............................. GACCCTACGGCAGTAATTGAAATTGATGTTGATGGT 2810457 30 100.0 36 .............................. TAATTTTTATGAAAATTCTATAGGTATAAACTCGAA 2810391 30 100.0 35 .............................. TGGGATGGTATAAAGGCTAAATTTACATGGTTAAA 2810326 30 100.0 36 .............................. AAAGAGCCTTTCAGCTCTTTGAAAATACAAAATCTG 2810260 30 100.0 33 .............................. TTACTTGAAGATAATATAGATATATTACCTACT 2810197 30 100.0 36 .............................. TCTGTATGTCATGGCGTTTAAAAAAGTCTTTTTTTA 2810131 30 100.0 36 .............................. TGGTCTGGGAAAATGTACCCGGAGCATTTAGTTCAA 2810065 30 100.0 36 .............................. TATACTGATTTCCGATACCTTTATAATCTCTTGCGC 2809999 30 100.0 37 .............................. CTGTATAACCTAAAACTAGAAGAAGATGCAGACGGGG 2809932 30 100.0 36 .............................. TAGGTATTCTCTAAACAAGGTATGGAGTCAATTGGA 2809866 30 100.0 38 .............................. AAATACATATATTCTTCTTCTGAGCCTTTTTGAGTTAC 2809798 30 100.0 36 .............................. ACATTCAATTACATCAACACCATAATCTAAACTACT 2809732 30 100.0 36 .............................. CCCAATAGTCCATTTCAAGCTGTAGATACAAGTGAT 2809666 30 100.0 36 .............................. ATCTGTCCAATCCCATAAAAATTTTTGACCTGTTTC 2809600 30 100.0 36 .............................. ATATTCAGTTAATTTTAAAAATCTCCAAATAGGTAA 2809534 30 100.0 35 .............................. AAGGGTATGTATAAAATAGTTCATCTATAACACTC 2809469 30 100.0 35 .............................. CAAGACTAGATATACTAGAACCTAGACTAACCAAA 2809404 30 100.0 36 .............................. CCGTACAACTTCTTTATGTATACATGAATATTGTAC 2809338 30 100.0 37 .............................. GCGGTTTGAGGAACTGGAAGAGATACACCAGAACGTG 2809271 30 100.0 37 .............................. GGAAATTACTGTCATTGAACATACTGGCTTTGGATGT 2809204 30 100.0 38 .............................. AATGTTGTTCTTCAACCAATGCTGTATTTAAATCTGCA 2809136 30 100.0 37 .............................. TAAAATATTTTCTACCTTTTTTTATTCCTTCTATTGC 2809069 30 100.0 35 .............................. GAAGAAATAGAAGAAGCTGAGCAGGATTTGAACAT 2809004 30 100.0 36 .............................. ATTTTTTCGCCGTCTACCTTGACGGCTTTCACATTG 2808938 30 100.0 38 .............................. GCCGAGAGAGTTACACGGGTGGAGGAAAGCGCAAAACA 2808870 30 100.0 34 .............................. TGCACATTACAGCCTATCTTATCTAGAAGACAAA 2808806 30 100.0 35 .............................. CATAATATAGGAGGTAAAATTCCTAATGCCGTACA 2808741 30 100.0 36 .............................. CAAAATAAAAATAAAAGGTAGGTGATTAGCATAATA 2808675 30 100.0 36 .............................. ATGAAAATAGAAGGTTAAATTATAATGATTGTAAAA 2808609 30 100.0 34 .............................. ACTAATTAAGTCGAATTATAACACTGGCTTGTTG 2808545 30 100.0 37 .............................. CTTGTATCTATGTGTTTGCTGTCTTCTATAATTCCCC 2808478 30 100.0 36 .............................. GTCTATAAATTTCTCGGTCTTCTTTGCAGAAGCCAA 2808412 30 100.0 36 .............................. CGAAATAATAAAATAATATAAGTAAATAAAGAGGTA 2808346 30 100.0 36 .............................. TTGAAAAAGTTAAAACCCCATGTTGATTGGTCTGTT 2808280 30 100.0 35 .............................. AAACCTTTATAAGTCCATAACAGCAACCTTAAAAA 2808215 30 100.0 37 .............................. GTCTATAAATTTCTCGGTCTTCTTTGCAGAAGCCAAA 2808148 30 100.0 36 .............................. TCACTTCCTATAACTCCGTTGAATTCTGTGGAGTAG 2808082 30 100.0 37 .............................. TTTTTAAATTACCATCTTTGTCCAAATCCTTGTCATG 2808015 30 100.0 36 .............................. CTATGCTAATAATTAAAATGGATTTAAAGGGCAATT 2807949 30 100.0 36 .............................. TGCTTTCTTTTGAGAAAACATTACCTGCATATATAA 2807883 30 100.0 38 .............................. CTGCAAAAATTTTCAAAGGTTTCACTTCCTGCCATAGC 2807815 30 100.0 37 .............................. CCACATGATGTGCAAACAATTTCATTGTCTTCATTTT 2807748 30 100.0 37 .............................. TTCCAATAAGTATTCCTAATTCATCAGATTCAAAAAC 2807681 30 100.0 36 .............................. CGAATTTTTATTACTTCTCCAAATTCTGCTGTATCT 2807615 30 100.0 36 .............................. GATAATTTAGCTAGTTGTACAATGACATACGTTGGT 2807549 30 100.0 36 .............................. TAACATCAGAACCCTCAGAAATACAAAAGGAGCTGG 2807483 30 100.0 38 .............................. TTCACACTGCAACGACAGAGAACTAAAAAAGTAAGAAG 2807415 30 100.0 38 .............................. AACAATTTATCTCTTAGGTCATTATATTTCTTTGTTGT 2807347 30 100.0 39 .............................. CGAAAATTCTATTGCTAGCTGCAGCAACAATTATTCTGT 2807278 30 100.0 36 .............................. TTATGCATTGGATTTTTTTGTGTAAAGAATTTTTTA 2807212 30 100.0 36 .............................. TTTTGTATAGATGTTCCCTTAGCCATCTCAACATGA 2807146 30 100.0 35 .............................. GCCATCTCAACATGACCACCAGTAAATTTTTCTTG 2807081 30 100.0 36 .............................. ATTTCACTTATCCTTAAACTAGAACGAAATTCCTCA 2807015 30 100.0 36 .............................. ATGTATCCATATTTTTCCATTACATACCTTGTTTTA 2806949 30 100.0 37 .............................. AATACTGCCAATATGATTTTTTCTTTCTTTGTCATTC 2806882 30 100.0 37 .............................. TACTTTGTTGTCTATATTCTGCGTCTTTTGGCAGATT 2806815 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 111 30 99.6 36 GTTTAGAGAATACCTATAAGGAATTGAAAC # Left flank : TTTTGCGCCATTCAATAAGTCCATCGTTGGTTTTTGAGTCATTTATAGCGAGGTGATAAAGTGTTCGTTATTTTAGTATATGATTTTGGTGAAAAGCGAGTAGGCAAAGCATTAAAAATATGTAGAAAATACTTAACTTGGGTTCAAAATTCAGTTTTCGAAGGGGAAATTACAGAGGGCAACTTAAAGAAATTAAAAATAGAACTTACAAAAAAGATGGAGAAATCAGAGGATTCAATAATCTTGTATTCTTTTTCAAATACTAGATATACTCATAAAGAAATAATTGGGTTAGAAAAAAATGTTCCAACAGTTTTTCTGTGATGTCGATAGGTAATAGTGCAAAAAACATGGGGGGTCGACAGCACAATAAAATCTCCGAAATGCCTGAAATTAAAGATTATTTTAAAAACACTTGATAAATTTTGGTTTCTACTGTAAATTATAGTAGTAAGCCTCAAATAGTTGCTTTTAGTGGCTTTTGTGGCAAATAAAAATGG # Right flank : ATTCTTTTGTTGTACCCTCATTTAATTTATAAAGTTATAATTAATAATGTACAAATAATATTAAATAAAAATGTACAAATGGTATGATTACAGGGTACAAAAGGAGGTACCCTAATGATTATCAAAAGTAGTATCATAACAGATTTAAATATTCAAACTGTCAAGGATCTTTATAAGTTAAAACCATTTATGGAGGACACAACATTGAAGGTTAATAAAAGCCAGATCGCAAGGGAACTTGATGTCGATAGGCGTACAGTTGATAAATACATTAATGGCTTTCATAAGGCCAAATCCAGAGAATGCGTGAATTGTATCACTGCTTACTATGACATTATCGCAGAGCTTCTATCTGATAACAGCCAGCAGATATTTTATTACAGAAGAGTTTTATGGCAATACCTAGTAGACAATCATTCTTATGAAGGGTCTTATGTGAATTTCTGCTACTATCTAAGAAAATATCCTGAACTAGACTCATATTTCAAAAAAAGCAGACC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 3 2825482-2823991 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061336.1 Ruminiclostridium herbifermentans strain MA18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2825481 29 93.3 36 A...-......................... ATATACCAATATACATGAATGGTGCTAAAGGCATTT C,TTC,C [2825469,2825471,2825475] 2825411 30 100.0 36 .............................. TCAGCAGATAAATATTAATATATTACTATATTCAAA 2825345 30 100.0 35 .............................. ATACAACTGTAATCATAATATAAACCTCCCTCTGA 2825280 30 100.0 35 .............................. TTTCCAATCAATACTACTATGTATATACATAGTAT 2825215 30 100.0 36 .............................. TTTTCATTATTAGTTATTGTTAAATTCTGTTTAGGA 2825149 30 100.0 36 .............................. TATATTACTCTCATTCCTACCCAATTGTCTCCTGCT 2825083 30 100.0 37 .............................. GAAGGAACTGCAATTTACAGTCAATTAAAAAGGCATC 2825016 30 100.0 36 .............................. CTTTTACAGTGTATAGTGCTGCATTATCCCAACTTA 2824950 30 100.0 36 .............................. AAATTCATCTCTCTCAATAATTTTAAGTAATTGTGG 2824884 30 100.0 36 .............................. TAATTTGGGTAAACTCAGTATCTGTCGCATGTTGCT 2824818 30 100.0 38 .............................. ATAATATATCCTGCTCGATGATCTTTACTCTCAAATCC 2824750 30 100.0 36 .............................. CATAATCATAAGAATCTTTATAATATCCTTTTCTAA 2824684 30 100.0 36 .............................. ATAATATTATTCGGGGAACTATTAAAGACCTAGACA 2824618 30 100.0 36 .............................. AATTTTTTCAGGCTGTCAATGTATTCTTCTTCAGAG 2824552 30 100.0 37 .............................. TACAATCCCTCCTATTTAATAAGCTCTTTTAGTTCTG 2824485 30 100.0 37 .............................. AACTTTGTTTTCTAACCATTTTTATAGAATCAAAGTC 2824418 30 100.0 37 .............................. TTTCAACACTGAATGTGAAATTAGAGAACCGAAAGAA 2824351 30 100.0 37 .............................. ATTAGTTGGCTGCATAATTATATGTAAATAAAAAAGC 2824284 30 100.0 35 .............................. TATACAAATCTTTTCTGTACCTTTTAAATTTTTCA 2824219 30 100.0 36 .............................. CAAAGGAGAAAGAGCAAAGTTGGAGGTCAACACTAA 2824153 30 100.0 35 .............................. ATCATACCGTTTCGGGAAATTAAACTCCCTCCAAT 2824088 30 100.0 38 .............................. TCAGAAAAACAAGTACTAGTAAAACGTGCTGGTGTAAC 2824020 30 90.0 0 ...........................TTA | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 99.3 36 GTTTAGAGAATACCTATAAGGAATTGAAAC # Left flank : TGTTTGATATTGAGTGCAGTTTACAAAAATTAAACTCGAATGAGCGCTTTCAAAAACGTCAGGAACTGGCAAAGCCTTTGATTGACGAATTTTTTGCGTGGCTAAAATCTTTAAATCCTGCACCCAAAACCAGTTTGGGACAGGCAGTTCATTATATGATTAAACAACGTAGATATCTGGAGCGTTATCTTCTTGACGGCAGACTAGAAATTAGCAACAACCGTGCTGAGCGTTCCATCAAGCCGTTTGTGATAGACAGAAAAAACTTCCTTTTTGCAAATACACCTCGTGGGGCCAAGGCAAGTGCTGTAATTTTCAGTATCATAGAGACCGCAAAAGAGAACGGCTTAAATCCTTATGCTTATCTTGTGTATATTTTCAAAAATGCTCCCAATTGGGATATTCACAATAATATTAATGCACTTGAACTTTTACTTCCATCTAACGTGCCAGAATCATGTAATAGTGCTGCTCGATAGGTTTTGTCAAGGTGCTTTTCT # Right flank : TATAAAAAAAGTAAAAAGATATATCCAAATATTGACAAAACATAAAATTAGTAGTAATATGAAAGTAAAATTAAACAAAATAAAATATGTATTGTCCTTTAAAAACCGTTAAATTAAAGATATGTAGAATAAGTGGATTTTCTAAATCCACTGTATATAGGTGGTGTTATTGACTATTGCAGCTTTGATTTTTGTGAGGCTAAAGATTAACACGAGTATATTGAAAAATAACTCATACAATTACATAACAAAAAGTCAGGAGAAAGTGATATTAATGTGAGCAATAAAGATACTAGGGTAAAATTAGAATTTGTCTTAATAAAAACTAAACAAAAGTTTTGAAAAACTTAATTATATATTTCAGAATACCTATAAAGGACTTGAAACGTAGTTAGATGAAAGTGTAATTACTAAATGAAAGATTAAAGAATACCTATAAAGGACTTGAAACGTAGTTAGATGAAAGTATAATTACTAAATTAAAGAATACCTATAAGGAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 4 4461629-4461282 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061336.1 Ruminiclostridium herbifermentans strain MA18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4461628 30 100.0 36 .............................. GGCTTTAATGAAAATACTAAATCATAAAATGCAGGA 4461562 30 100.0 36 .............................. GGCTTTAATGAAAATACTAAATCATAAAATGCAGGA 4461496 30 100.0 21 .............................. AAGCTGAACGTAAAGAACGAA Deletion [4461446] 4461445 30 86.7 36 ..G...TAT..................... ATTAATTGTGGAAGTGCAGATACTAAAAAAGGTAAA ATG [4461435] 4461376 30 100.0 35 .............................. TCGTACATCATACAGTCGCACATGTTTGATTGCTG 4461311 30 93.3 0 ..................C.........T. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 96.7 33 GTTAAAAGCTAACTATAGTGGAATGTAAAT # Left flank : AATTATGAGGTTGGACAGAGAATTAACCAAGAGTTATTTGAATGTAAGCTTTGTGGCAATAAAATGAATGCAGATAGAAATGCATCATTCAATATTGCAAGGTCTACAAAGTACATAAGTTCAAAAGAGGAGAGTGATTTTTATAAACAATTAAAATAAAAGATAGTTTTGTACATAGATGAATATTTTACGGTTGATTTAGCAACCGAAGTCTGAGGGCATGTAGAAAAAAGTATAGGTATATACCAACATACTTGCATTGCCACTCGGAAAGGGTTAACCTTGGTCATTGTGTTACCGACCAAGCATTCCAACATTAATTATTCTGTCGACCATGAATAAAATAAAAAAGCCAGTATATCGACAGAACTCACAACATGCAATAGTACTGATTTTATTAATATTATGCTTATAATTTATTGTTTTAGTATAATATGCTGATTGTATCGACAATATCAACTTCTTAAATGGTTATTATTGGTGGTATTTGAGCTAAAGGG # Right flank : ACTAATCACAATATCAGGATAATATATATTAGAATATGTGAAATTTTGAGAACATAGATTGGATAAATTAATTAAGACTGTTTAAAATAGAATATACATTAATTTGCTGTAATCTCAGAAATTATACTATGAGTTGGGATTTAAGATATATATGCATGGGGGTATTTACTTCAGAAAAAAAAAGAATAACCGTTTTATATTGGGTGGGGGTAGTCAACAATTACCCTTCGGAACGGTTATTCTTCGTATGAGACTTTCTAAAATATTTATTTATCTAAACTTTAGCTGGCTTGAATGATGGGTTAACATATTACTTAAGGAGTAAGTTAAATAACATTCGGCGGTCTGAAAATCCCTGTTCATAGAAGAATTTTGATATAAAGCTAAGTAACTAATATACATTATGGGAGATTTTTGCAAGGTGTTAGTACTCAACATTTATCAATTCTTGACTGTTTTTTCTATATTTGCTTGTTATATACAGTATCAGAATGAATAGG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.17, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAAGCTAACTATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //