Array 1 255080-244602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGYL01000001.1 Bifidobacterium angulatum strain LMG 11039 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 255079 29 100.0 32 ............................. GCGGCGATACACACCATAGACGACACGCTGCT 255018 29 100.0 32 ............................. ATGCTCTCAATCTTCAAAAAAGAGAATCTCTA 254957 29 100.0 32 ............................. CAACGGCGCGCTTACCAAATCACGGCCATATC 254896 29 100.0 32 ............................. GGATGTGCTCGGAACTCCTGCGCAGCCCCCTC 254835 29 100.0 32 ............................. ACGGCCATCCGGTACCGGTAGGTCGTGTCGCC 254774 29 100.0 32 ............................. GGCCTGCCTGTAGCAGTGCTCAGCGCCTGATA 254713 29 100.0 32 ............................. GCTTACGCGAAGGCCACCGAGAAGGCAGTGCG 254652 29 100.0 32 ............................. TTGTCGTGTGCGTGTTGCCTTTGGAATCGGTC 254591 29 100.0 32 ............................. GGTAGAATTGACTCCATACATATATACCTCCT 254530 29 96.6 32 ............................T TGTTCGGCAACGGTGACGTTTCGCTGACATTC 254469 29 100.0 32 ............................. CAATGACAACCTACACCAAGACAGACAATTAC 254408 29 100.0 32 ............................. GGGGTGGTGTTAGGGAACGTCTGGAACATGCC 254347 29 100.0 32 ............................. CGGTGGGGGAAGAAGAACATGCCGCCGTTCAC 254286 29 100.0 32 ............................. GCTTAGGCGTGAAGGTGCAGGCTATCGGCTAT 254225 29 100.0 32 ............................. TTCTTTTTCGTGACCACGTTCAAACGGTATCA 254164 29 100.0 32 ............................. GGTTGGTGGCCGACGTGGCGGGCGAGATAGAC 254103 29 100.0 32 ............................. TCGATCCACGATTGCTCGATATTCGAGTAAGT 254042 29 100.0 32 ............................. GGTGACGTTAGGCCGGTGCTTCCGCGTCGACT 253981 29 100.0 32 ............................. TTCTAGGCCATGAATCGGTTGAGACCACGGAG 253920 29 100.0 32 ............................. TACCCACGAAAGCATGAGGGAAACCGGAAACC 253859 29 100.0 32 ............................. GGTGACGTTAGGCCGGTGCTTCCGCGTCGACT 253798 29 100.0 32 ............................. CGCATTGGCCTTACCGTGATGGCGCAGAACGA 253737 29 100.0 32 ............................. GACATACAGAACACGTGGAACGCGTTCTATCA 253676 29 100.0 32 ............................. GGGCTGCTGCTAGCACGAGGACACGCACCACT 253615 29 100.0 32 ............................. GGTTGGAAGCTTTTGACGGGAAAGGAATTGGA 253554 29 100.0 44 ............................. ATGATGATGGATTTGCATGGATACGCGCAGGCCGCGCCGCTCTA 253481 29 100.0 32 ............................. GTGAGCTTCAATGTCTCCGCATCCGCCTGTTC 253420 29 100.0 32 ............................. CCGCTCAGGCCGAGCTCGCGGGAGGTCAGGTC 253359 29 100.0 32 ............................. AGGAACGAAGCGGAACTGCTCGACATGTCCGA 253298 29 96.6 32 ............................T TGAGTCCATACATATATGTACCTCCTATCTCT 253237 29 100.0 32 ............................. GGGTATGCAGTCACCCACATCACACTCCATAT 253176 29 100.0 32 ............................. ACGCGCTGAAACACGGAAAAGCCCCTCCCCCC 253115 29 100.0 32 ............................. TGTCCGTGTTCGGTGCGCGCGTTAATCAAATC 253054 29 100.0 32 ............................. GAGAGCAAGACCTTCAACTCTAACGCGCCCCA 252993 29 100.0 32 ............................. GAGCTTGGTAACGCTTGCTTCATCGATACTGG 252932 29 100.0 32 ............................. TACACCGACGAACTCGGGGACAATCTTGCCGA 252871 29 96.6 32 ............................T CCGCTTGGCCGACACAAGATCGCCGGCATCCA 252810 29 96.6 33 ............................A CCACATGGGGGCGCTCATATCTCGACCGCGGAC 252748 29 100.0 32 ............................. GGTTCCGGTCGTTCGACGGTTTCCTGCCGTTC 252687 29 96.6 33 ............................A CAAGCTTACCCGCGAGAAATTCCCGGAATTGCG 252625 29 100.0 32 ............................. CAATGGCCGTAACCTGATAACTAACCCCAAGC 252564 29 100.0 32 ............................. ACGCCATGCTCTTTCAGGACGCGGAAACACTC 252503 29 100.0 32 ............................. TTCCTGTAGCGCTTCTTGTCGAAGCTCATGTT 252442 29 100.0 32 ............................. TTGCCGATATGCTCCAACGTACTCGCCATGTC 252381 29 100.0 32 ............................. GATGCGCAATACATGCGTTGTTGTCGCAAGAT 252320 29 100.0 32 ............................. CGGTAACGGTTTGCGTGACAACGTTGATGCTT 252259 29 100.0 32 ............................. AATGCATTAACCCAAGCACAGACCAACGCAGC 252198 29 100.0 32 ............................. GGAGAAGCCGCCGTGGGTGATCGAAACGGTCA 252137 29 100.0 32 ............................. AAGGCACACGCTTCTGCGCCATCCACACACAC 252076 29 100.0 32 ............................. GGCATATGGGGCGTATGGCGTACCCCTGCCAC 252015 29 100.0 32 ............................. GGGACGCGCACCGTCATGCCGTCCTCCGTCTC 251954 29 100.0 32 ............................. TGCGTGGTGCCATAAAGGGTGTCTCGCACCTG 251893 29 100.0 32 ............................. GACGAAGCCGCGTGGCAAGCGAAACTATATAA 251832 29 100.0 32 ............................. CGGCGGCGCGCTTACCAAATCACGGCCATATC 251771 29 100.0 32 ............................. CGTTTGGTTAACTCCAATATTACCCGTTCGGC 251710 29 100.0 32 ............................. ATCAACTACACCGGCCTTCCATGCGCCACGAC 251649 29 100.0 32 ............................. CCGCGAAAGAGTCAACCAGCGTATCCAAACCC 251588 29 100.0 32 ............................. TCACCAACGCCATCAACAATCTAAGCGCGGAC 251527 29 100.0 32 ............................. CGATTATGCCACCAAGCAGTACGTCAACAGCA 251466 29 100.0 32 ............................. GGGGTGGTATTAGGGAACGTCTGGAACATGCC 251405 29 100.0 32 ............................. ACCAACCGTGATATCTACCGCGAACTCGCCGT 251344 29 100.0 32 ............................. ACTATTAGGCAAATAGAGAGGATATGACCATA 251283 29 100.0 32 ............................. AGCCCGGCATCAGGATGCACCGGCGCTTCGGC 251222 29 100.0 32 ............................. GCGAACATCGATCGGGTCACGAAACTGCCGGA 251161 29 100.0 32 ............................. GGGCATGAGTCCGGTCGGACTGGTCAAATCCC 251100 29 100.0 32 ............................. TTGAGGGGCGACGCGTCATCGCCCGGTTCGAC 251039 29 100.0 32 ............................. TCGCCGGTGAGGATGCGGCAGGTCCTCGGGTC 250978 29 100.0 32 ............................. GGAAACGTGGGCGCTCACCGGCTCCATCAAGG 250917 29 100.0 32 ............................. GGCGGCGGGGGAGGCTCGTCATCCGGCGGCAC 250856 29 100.0 32 ............................. AGGTGAGACAAATACAAGCCATCTACCTCAGG 250795 29 100.0 32 ............................. TCGGCCGCCGCGGCCCACGCCAGACACAAGCC 250734 29 100.0 32 ............................. TCGCCGGCCGAACGGTATTGGCCACCGATGAC 250673 29 100.0 32 ............................. GGCGGCGACGCGCGACCGCATGGCGACGGATG 250612 29 100.0 32 ............................. GCGAACCCCATCGTCATCGTCATCACCGCGAT 250551 29 100.0 32 ............................. TGTTCTGGGTTGGCGGCGATGCGGTCGGCCAT 250490 29 96.6 31 ............................T ACGAACCTCACACAACGTGAGGGTCACATTC 250430 29 100.0 32 ............................. GCGATGGGCGCGATGACCACGCGCATGTCCAG 250369 29 100.0 32 ............................. CCGTCAGCGAGGCTGGTGCTTCCGGCCATGCT 250308 29 100.0 32 ............................. CCGGATACACGCAGAACAGCTTCAAATACCCG 250247 29 100.0 32 ............................. ACGAAACACGCCGCGATGCCATTGGCGATATG 250186 29 100.0 32 ............................. GTCAGGCCGTTGCCGCTCGTGAAGTCGGCCAT 250125 29 100.0 32 ............................. TGCTTATGCGCGTGATCGCCGTGGAATCACCG 250064 29 100.0 32 ............................. GTTACGGGATTGTCAACCCCGCTCCACATCAT 250003 29 100.0 32 ............................. GGCCTCGTGCTGTTTTACCCCGACAAGCGGCA 249942 29 100.0 32 ............................. TCGTCACGAAGGTAGGGGAAGTTGCGCATGGT 249881 29 100.0 32 ............................. GTCGATTATGTGATCGATAAAGCAAACCAAAT 249820 29 100.0 32 ............................. TGTGCCATCTGCATCTTGATCCCGCCGGTTCC 249759 29 100.0 32 ............................. TTCGCCGGCATCGACACCGCCAACGTCGAAAA 249698 29 100.0 32 ............................. TGCAAATCTGCCGGTTTCATGTCCAAGGGCAC 249637 29 96.6 33 ............................A CTCTGTCCGGTGGTCAGGTAGTCGCCCGCGTCC 249575 29 96.6 33 ............................T AGGGTACTGATCTTTACGGTTCATCTCGTAGAA 249513 29 100.0 32 ............................. CGCAAGCACCCGCAGACCAAGCACTATCTACG 249452 29 100.0 32 ............................. GATATTCAGAACACTTGGAACGCCTTCTACCA 249391 29 100.0 32 ............................. AAACGGCGGGCGTCAACGTAATTAAGCAAATC 249330 29 100.0 32 ............................. ACGCCTTGCGCAATGCGTAGGATTTATAATTC 249269 29 100.0 32 ............................. CCCTACTTCGCCAAGTACAAGCTTGATATCGG 249208 29 100.0 32 ............................. GTCTGAAACATGCCTGTGATATCCGCCGAATC 249147 29 100.0 32 ............................. CGCGACCAAGGCCGGTGCCGCCAAGGCCAAGT 249086 29 100.0 32 ............................. AACGCCTACGCTCAGGCGCAGGTGGGCACGCA 249025 29 100.0 32 ............................. AACGCCTACGCTCAGGCGCAGGTGGGCACGCA 248964 29 100.0 32 ............................. AGGCTAATGAGGAAAACATTGTGTATCTGCGG G [248947] 248902 29 100.0 32 ............................. GGGTCGTCGTAATGCGCCAGCACATCGGCAAG 248841 29 100.0 32 ............................. AAGAAAAGCCTGAGCGCGGTGGACCTACTGCC 248780 29 100.0 32 ............................. CTGCGACAAGATGACTCTTAGCAAAGGAGGAT 248719 29 100.0 32 ............................. TGCTTCACCCTCTGCACACGTCTACCGTCCTT 248658 29 100.0 32 ............................. CTGTTCAGGTCGAGGCGCCCGGACCAGCCGCT 248597 29 100.0 32 ............................. TGGTCGGCGAGTTTTCCGGTTGCGGTGGTGGT 248536 29 100.0 32 ............................. TGGGACGAAGCGCCCTCGATGCGGTATGCAAT 248475 29 100.0 32 ............................. CATCATGGGCGATACGCACATCATCGCTGTCG 248414 29 96.6 32 ............................T CGGCTGCGGCTTGGGCGGACCGGGCGGCATTT 248353 29 100.0 32 ............................. AGCCGATACTTAGGAAACATGACAGATTATAG 248292 29 100.0 32 ............................. TGGTACGACTGCCACACGTCCAATTGGATATT 248231 29 96.6 34 ............................T GCAGCAGCACGTCGAAGATCTCCGGGTTCGCCTT 248168 29 100.0 33 ............................. ACGTATGACAATTTTGCGTGTGCGTGCGGTTTG 248106 29 100.0 32 ............................. CGTGTAAGCGCTATGGAAAAATCACTGGCGGC 248045 29 100.0 32 ............................. AGAAGGATTGTCAGACACGATACCATTATTTC 247984 29 100.0 32 ............................. TACCCCATGACCATCTGCTCGCTGGGCGTGAC 247923 29 100.0 32 ............................. ATGGCGAAAGAGACGGTAATCTCACGCACCGG 247862 29 100.0 32 ............................. ACCAGGAACCAAACAATGAATGACAGCACACT 247801 29 100.0 32 ............................. CGGTCGTAGTGTGCCTGGGAACGATAATAGAG 247740 29 100.0 32 ............................. CAGGGCAAGCTCACCATGACATCCACCGAACT 247679 29 100.0 32 ............................. CATGTCCTCGACGGACTTCCTACGCCCGTCCG 247618 29 100.0 32 ............................. GATGTGGAAGAACTTGGGGATGGCATCAGGGA 247557 29 100.0 32 ............................. CGCCAGAAGGAGCCTGATGGGTTGCGCTGGTG 247496 29 100.0 32 ............................. CGGATCGCCGCCTGTCTCAGTTCGGGCAGTTC 247435 29 100.0 32 ............................. TCGACGACGAGAAGGCGCTCAAGACATACGCC 247374 29 100.0 32 ............................. CGCATGCAGGCATGACCCGAGGCCGTCACGGA 247313 29 100.0 32 ............................. GATTTCGGCTCGGGCTCGCCGCCTTCGCCGGA 247252 29 100.0 32 ............................. TGCCAGCGTGCGGTTTTGGACGTGCCTTCCGT 247191 29 100.0 32 ............................. CGTGCATCGAAGAGGCATGCGAGGGGCGGAGC 247130 29 100.0 32 ............................. GACGGCCCGTGCGAAAGCCTCGAGGCGTTCTA 247069 29 100.0 32 ............................. CTCATGGTCCGCCCGGTGTACGGGTCGTGGAA 247008 29 100.0 33 ............................. GATGAACGAACCCACCGCACCAGACTGGAACCA 246946 29 100.0 31 ............................. CGCTTCCGCCGGCCAGGGCCGGGTGCGCTTC 246886 29 100.0 32 ............................. TACCTCCCAACGGGAATATGTCTCGTGTGTCC 246825 29 100.0 32 ............................. GCGCTGCCGGTGGACAGGATCATCAAAAGAGC 246764 29 100.0 32 ............................. GCCAAGCCGGGCGGCGGACTGCCAATCGATTG 246703 29 100.0 32 ............................. CAGCAAGACACTACAAGAAAACCACCACAGAC 246642 29 100.0 32 ............................. TTACCCAGACAGCGAATTCCATTAAATCTCAG 246581 29 100.0 32 ............................. CAGCTGCAGAATATGGATGTCGGCACCTTCCA 246520 29 100.0 32 ............................. AGTGGACAACAAACAAGGCTATATCAAGACAC 246459 29 100.0 32 ............................. CTGCTCGTCAACAGCGACTTCAGCCAGGGCAC 246398 29 100.0 32 ............................. GGTCGTGCAGTGGGCTGCCGACGCCTGGGCTT 246337 29 100.0 32 ............................. AGGCCGAGAAGACCGACGACGATACCTTGCAG 246276 29 100.0 32 ............................. TGCGCGACCTTCAAAACACCTTGCATGACCTC 246215 29 100.0 32 ............................. GAGAGGAAGAGAATGGAGGGAAGAAGAATCAT 246154 29 100.0 32 ............................. CAGCCTCGGCAAGGAATTCCAGACGCTGAAGA 246093 29 100.0 32 ............................. TGGTGGGGAGCTCCAGGCAGATCATGTGGGCC 246032 29 100.0 32 ............................. CCGGGTGGGTTATGCACAATGCTTGAAAAGGG 245971 29 100.0 32 ............................. GGACGTGTTCGTGGCATCCACATCGACGGCCG 245910 29 100.0 32 ............................. GTTTCGGTCGGAGCCGCGCCGTCGATAACAAG 245849 28 96.6 32 ........-.................... ACCTACGGCGGCTACACCACCCTGAGCCGCCA 245789 29 96.6 32 ............................T GTGGATGCGCCCGTGGCTGGCATGTTGGATTT 245728 29 100.0 32 ............................. ACTGAGGGGCAAGTCATGTGTGAGAAGTGCCC 245667 29 100.0 32 ............................. GCGCCCACGCACGTAGCACACAACACGCCAAA 245606 29 100.0 32 ............................. CGTCATCCGCAGATCGACCAGGGCACCACCGG 245545 29 100.0 32 ............................. GCGATGAAAGACGGCAAGAGGAACGAAGGCAA 245484 29 100.0 32 ............................. GCGATGAAAGACGGCAAGAGGAACGAAGGCAA 245423 29 100.0 32 ............................. TCGGCGACCTTCCAGGCAAAAGTGTTATCTGT 245362 29 100.0 32 ............................. GGTGATGCACGACGAGATCATGGCCGCGCACA 245301 29 100.0 32 ............................. AGCACCAAGAAACGGCTTAAGCCCCTCCAAGG 245240 29 100.0 32 ............................. GGTGCGGTTGGACCCGTCCTGCGCCTGGTAGG 245179 29 100.0 32 ............................. CATTCAATAGGCCGTTAAGAATCGCGCTACCT 245118 29 100.0 32 ............................. CGTGAGGTGCACCGGCTTCGACGGTGCACAAC 245057 29 100.0 32 ............................. GAGTTGTGCAATCTTCTGATTCCCCTCGTGTC 244996 29 100.0 32 ............................. GCCAAGATTCAGGCTCAGCGTTTGGTCGAGAT 244935 29 100.0 32 ............................. CCTCCAGGTAAACCCTCCATGTGAACCCTCCT 244874 29 100.0 32 ............................. GCGTAGGCGGCCGTCTCGGCACTGAAGCATGT 244813 29 100.0 32 ............................. CGCATCAGCCGCCAGCCGGCCGGACCCGTCTA 244752 29 96.6 32 A............................ TCGGACGAGGCCGCGGCTGCCATCAAACGCAT 244691 29 100.0 32 ............................. AACGGCGGCAACTGGTACCCCGTCGCCAACAG 244630 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 172 29 99.7 32 GTGTTCCCCGCACACGCGGGGATGATCCC # Left flank : ATGTGGGTTTGTGGGATGAACGGGTAGGGGAGGTCTCTGCTGGAAAATCCTATGGTGACGATGAATGGGACGGCGGCGAATGGTAGTGATTGTGCTGACGGCATGCCCAATCGGTTTGCGAGGAGATCTTACCCGTTGGTTATTGGAGATATCACCAGGGGTGTTTGTGGGGCATGTCGATGCTCGAGTTCGGGAAAAGATATGGAAACGTATCGTTGAACTATCAAAAGATGGCCGTGCCATCATGGTCTATTCTGCGCGTAATGAGCAGCATTTGGCATTTAAGGTACATCGAGCGGACTGGAAGCCCACGGATTGCGACGGGCTGGAGTTGGTGAAACGACCTAAAGAAACGAAGGAAAAATCATTCGCGGGCACGCCTCGCCGAGGTTGGAGCAACGCCAGTAAATATCGGAAGGCAAAGAAATATTCAAAGTAAAACTGAATGAAAAATACTCACGTGATGAGAATGTGCCTTGATATTATGCTATTTTCTTAGT # Right flank : CTATGAGGATATCCGAATGCAGATGCTATGGGGTGTTCTCGTTGTCTATTTAGAAGTGCAACACCCTTGTTGGTCCTGTAATTCTAGCAGTTTGTCGGCGAACGCCTCGGCGGGCGTGCGGTAACCCAGCACGCGCATGGGCCGGTTGTCGGTTTCGTCGACCATCTCCCCGACATCCCCAGCCATATCCATCCGGATCCCGCTTCTTTTGGACGGATGCCGGCGGATCAAGCCGTTGCGGTTTTCGTTGCCTTCCCGCTGCCAGCTGGAGTACGGGTCGGCGAAATAGGCGTCCATGCCCAGCTCGTCGCGCAGGCGCGCGCCGGGCGAGCTCGGTGCCGTTGTCGTGTGTGACGCTGATTCTGGCGCCTTCGGGCATCCGGGGGAATATCGCCAGCTGCGCTCCGATGTTCTCCCCGGCGGTCTTGTCAGGGACGATCCGGGCCATGAGGAACCAGGTCTTCCGTTCAGCCTCGGTGTGCAGGTTGCATCCCACGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //