Array 1 205693-204216 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPM01000063.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SALF-276-1 NODE_124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 205692 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 205631 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 205569 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 205508 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 205447 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 205386 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 205325 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 205264 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 205203 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 205142 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 205081 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 205020 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 204959 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 204897 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 204794 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 204733 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 204672 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 204611 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 204550 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 204489 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 204428 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 204367 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 204306 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 204245 29 96.6 0 A............................ | A [204218] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 223379-221825 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPM01000063.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SALF-276-1 NODE_124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 223378 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 223317 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 223256 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 223195 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 223134 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 223073 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 223012 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 222951 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 222890 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 222829 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 222768 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 222707 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 222646 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 222585 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 222524 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 222463 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 222402 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 222340 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 222279 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 222218 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 222157 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 222096 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 222035 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 221974 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 221913 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 221852 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //