Array 1 2477-1287 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPZ01000037.1 Bifidobacterium longum subsp. longum strain MCC10017 contig0037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2476 36 100.0 28 .................................... GGATGTCAATCAGGAACTTGTCCGTGGT 2412 36 100.0 28 .................................... CCTGACCGTCATTGGTAATGGTGGTATC 2348 36 100.0 28 .................................... ACACGTGGCGTTGGAATAATCCGTTAAG 2284 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 2220 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 2156 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 2091 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 2027 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 1963 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 1899 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 1835 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 1771 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 1707 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 1643 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 1579 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 1515 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 1451 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 1387 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 1322 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 19 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGTAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CCGATGTCTATTTAGAAGTGCAACACCCTTGTTGGTCCTGTAATTCTAACAGTTCGTCGGCGAACGCCTCGGCGGGCGTCCGGTAGTCCAGCACGCGCATGGGACGGTTGTTGATCTCGTCGACGATCTCCCTGACCTCCTTTGCCATGTCCATCCGGATCTCGCAGCGTTTGGGCAGATACCGGCGAATCATGCCGTTGCGGTTCTCGTTGCTTCCCCGCTGCCAGCTGGAGTACGGGTCGGCGAAGTACGTGGCCATGCCCAGCCCGTCGCGCAGCCTTTCGTGGTGGGCGAACTCGGTGCCGTTGTCGTGCGTGACGCTGACGCGCGCGCCGGCCGGCAGCGGCGAGAACATGTCCAGCTGCGCCCCGACGCTCTCGCCGGCGGTCTTGTCCGGAACGATGCGGGCCATGAGGAACCTGGTCCTCCTCTCCACCTCGGTGTGCAGGTTGCATCCCACTCCGATGACGCTGTCGGCCTCCCAATGGCCGAACGCGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 79340-78596 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPZ01000036.1 Bifidobacterium longum subsp. longum strain MCC10017 contig0036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 79339 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 79275 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 79211 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 79146 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 79081 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 79016 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 78952 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 78887 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 78823 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 78759 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 78695 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 78631 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 12 36 98.8 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : AATCTAACGGGTGTTGCACTTTCATTTAGACAACGGGCAGCTCCTGCAACTCCTCCTTGCGGGCCTTC # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 11021-10585 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPZ01000039.1 Bifidobacterium longum subsp. longum strain MCC10017 contig0039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================================================== ================== 11020 25 77.8 72 GA....-..-...........G..C.. AGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACGGTCCGA 10923 27 59.3 33 GC.ACG..C.....C...G.A..C.C. ACGGCGGTCATCACGATCGCCACGGTCATCGCG 10863 27 96.3 54 ........................A.. ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AAG [10857] 10779 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCGCGGTC 10719 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [10672] 10671 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 10614 27 81.5 0 ......A.......C....C.....CG | CC,G [10589,10594] ========== ====== ====== ====== =========================== ======================================================================== ================== 7 27 85.2 41 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : TGTGGCCGCGCTGTTCATTCTGGACTTCGTGTGCATGGCGATTCTGTAACGCTGATTGACAACGGATTAGCCTTTAAGGATTAATCCGCCGCCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCCTTGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACTGACAACTAAATGTACATGGCAGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCTCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTGCGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCGAAGTCGC # Right flank : ATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGGA # Questionable array : NO Score: 4.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:0, 6:0.25, 7:-0.92, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //