Array 1 51-1811 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIQO01000092.1 Pectinatus frisingensis strain MB360 PFRG_160.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 31 ............................. GTATAGAGCGTCAGATACTGATTCCTTATAT 111 29 96.6 31 ............................G CTTGCGGGGCGAACATTGATAACCGGCAATT 171 29 100.0 32 ............................. ATGTCGACTCAGTACGACATCACATTTACTAA 232 29 96.6 31 ............................T TCTGTTATTAATAGCAGCGTTATTTATGAAG 292 29 100.0 31 ............................. CCAGCGGTTATAGACAACTTAAATCTTAAAT 352 29 96.6 31 ............................T GAAACAGGGGATAATCCCTTGCTTGCAATAC 412 29 100.0 31 ............................. GTGTATTGATAATGTCTAAGCCGATATTGTA 472 29 96.6 31 ............................T GCCGAGTTACAAAGCTATGCAGCGTTTAGCG 532 29 96.6 22 ............................G CGCTTTGCCAGCCTCTACCGGT T [545] Deletion [583] 584 29 93.1 31 .....T......................T CCTTATGTGCTATAATCACCTTTGCATGTTA 644 29 96.6 31 ............................T AATGAAAATACTGCTTGGCTTAAAACCTATA 704 29 100.0 31 ............................. AACGCCTGTCATAAATCCTCCTACAAGCCGA 764 29 96.6 31 ............................T GCGAAGAGCAGCGGCGAGAGGGAAAGCACTG 824 29 100.0 31 ............................. TCAGCTAATGTATGCAGCTTTTTAAGATTCA 884 29 96.6 31 ............................C ATATCAGCGTTACGCCGATGCCGAGCGTAAA 944 29 100.0 31 ............................. AAAAGAGGAACGACATACTATTTCGTCAATA 1004 29 100.0 32 ............................. CAATTTGTTATCCGCCAGATGATCAAGAATGT 1065 29 96.6 31 ............................T CACAACTTTTTTTGTAAATTATATGACTGTA 1125 29 96.6 31 ............................G ATTGAAGCGGTTTCATGGCTGGCATATGAAT 1185 29 96.6 30 ............................T CTTTTCCGTGTCTGAAAACTTTTCTCAAAT 1244 29 96.6 31 ............................T TTCATATCCTGCAATGTCAGATCGGATTCGC 1304 29 96.6 31 ............................T TTTGGCATTTATCCCTGCAAATTGTTCAAAA 1364 29 100.0 31 ............................. TCCCGAAAAGGCTATAAAATAAGCGTTGATC 1424 29 100.0 31 ............................. CTTTTGTTCTTTCGTTATATATAGTATAGTC 1484 29 96.6 31 ............................T AGCACAAGATACCTTTGTTCTTTGTAGCTTT 1544 29 96.6 31 ............................G CTAATTTTTCATATTTTTTAATTAAGTCATA 1604 29 100.0 31 ............................. TATTTATTAATCTTGTAATTCAATACTAATT 1664 29 100.0 31 ............................. TACAAACATTATTATCAGCTCTCTTCGTTTA 1724 29 96.6 31 ............................T ACGCTTATATTTATCTGCGTCTTCAGGTGAT 1784 28 72.4 0 A.....T..T.......T..-..CA...T | ========== ====== ====== ====== ============================= ================================ ================== 30 29 97.0 31 GTTATCCGCCGCATAGGCGGCTTAGAAAA # Left flank : GCATAGGCGGCTTAGAAATTTGGATTCAGCTGTACTATTTAAAATCATTGG # Right flank : TTTCATGAGTGTGTGGCTCACTTTTTCGTTGACGTTTATAAATATAAAAAAATACGATGTAATGTATTATTATAAGTACATATAAATTGTAATATACTACAATAGAAAAAATATATGGGAGGTAATATATTATGCTGCCAAATTCCGATAGACGGAGGCCGCATGGGAAGGTAAAAAAAGAAAGTGCATCGGGGATTTTCCCGGTGCACTTTTTAATTAATGTGTCCAATATATTTTGAAGTTGGATTAAATTTGTAAGTCGTAGTTTTTAAGTAAAAACTCTCTTTGGGCATTTAGATGTATTATCATACCGTTTTTGGCACCGGTAGCATCACCTGCGGCTATAGCTTTAGCTATCTGACGATGCGTGATGACCGTTTCCTGGCACAGAGAATTATCCGTTATGAAGATATTTTTCTTTATGGAAGCATGGATTATCTGTGTTATTTTATAGATGATTTTATTGCCGCTGGCATTGCCGATAGCGGAGTGAAAAAGAT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGCATAGGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30267-31743 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIQO01000198.1 Pectinatus frisingensis strain MB360 PFRG_207.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 30267 35 100.0 39 ................................... TATAATCGTGTTATCATTAAAAGTAAAGCTATTGACAAC 30341 35 100.0 37 ................................... AATCGACAAATATGCTTAATGTACCCTGCTAAATCAT 30413 35 100.0 37 ................................... TTAAAAAATATAAAGGTGTTATTGAACACGGTTATCC 30485 35 100.0 39 ................................... TATGCGCTTGCGAATGGAAGAAAGGAACGTAACAGAAGA 30559 35 100.0 37 ................................... GTTATTACTCTCCTTCTTGCATTTTTTTGGATTTCTT 30631 35 100.0 35 ................................... AACAAGGACACAACGTATAGCGTCAGTTTTTCCAC 30701 35 100.0 37 ................................... TTAAAAATATTCATCTCTTTTTAAATTTACATTTTCT 30773 35 100.0 38 ................................... TACTTTAAACATTTAAAACGCTCCTTTAAATTGTTTTA 30846 35 100.0 37 ................................... AACTTTTATAATAGTGGATACAGCTCCACCTATTAAC 30918 35 100.0 37 ................................... TCAGTTGTTTATCAACGATTATTGCAGATACAGTATA 30990 35 100.0 35 ................................... GTCGTACAGTGCGTTGGTAGAAACAATGTTGCCGT 31060 35 100.0 35 ................................... AAAAATATTTTTGAAATTGCGGCAAATTGGCACGA 31130 35 100.0 37 ................................... TATCTCCTGCTGTTGCGGCTCCCATATATCCTGCTGT 31202 35 100.0 39 ................................... TATCTGACAGTATTTCTCCTACTGCTTGCCAACCAGATT 31276 35 97.1 37 .................T................. TAATTTTTTCTGTACATCCTTCTTCATCAATTTCCGT 31348 35 100.0 33 ................................... AAGTCATTATTTTCACTGGCAATATTATTTTTT 31416 35 100.0 37 ................................... TTTTTAACAAAAAATACTTATAATTAGCATTTATGTC 31488 35 100.0 43 ................................... TTCTAGGTCGATAACTTCAACATCGCCGAGGTATTCGTCGGCC 31566 35 100.0 37 ................................... TTAGCTAACATTTCGATGATGTTAGCTTTTAGCTCTT 31638 35 100.0 36 ................................... ATCTGACTCATTTCTAATTTTGTGCCTGCAATTCTT 31709 35 94.3 0 ..............C.............T...... | ========== ====== ====== ====== =================================== =========================================== ================== 21 35 99.6 37 AATAAAAACCATTAACCCCTGTAGGGGACGAAAAC # Left flank : TTATTCGATAAAAGTATGCTATAATAAATAATTATGGTAGGCAAATAAAATGGATAATAATGCAGATGAAAATGAATTTGTTGCTATTGATGATAGACGCTATATAATACTGGCAATTTATGATATTGTCAACGATAAGCGCAGAAGTAAAATGGTCAAATGTCTTGAGGGGTTCGGAGTCCGAGTGCAAAAATCAGCTTTTGAAGCTTATTTGACGAAAAAAAGCTATGAAAAATTAATGAATACAGCAAGCCATATAATTGATATCAAAGAAGATTCGCTGCGTGTATATTTGCTTGCAAGTCATACTTCTGTGCGCTCATGGGGCAAGGGGCATGATCATGTTGAAGATGTTATAATATTTTAATCCGCGCCGCACTGCTGATAGCAATGTTTTTAAGTTGATTTTTTAGGAGAGAAGCTTATTGAAAGCAAAAAAAATGATCCGCGCCGTAAACAGACAAACTGATTCAGTATTGTCAGGCATCCCAGGGCACAGT # Right flank : CTCATATTCGGATCCGTCAGATCCCCAGCTTTCAATAATAAAAACCATTAACCTTGAACGAACATTTCCATTTCATGAGGATATATGGGTAAAATTTAAGAATCAATAAATTTTTTGACAAAATAAAGAGACTGCTACACATAAACTGATATGCTCCCCCTATAGGAGACAATGAAAAAATAAATTGTCAACTATAGAGGGATTTCTATGTCAGTTAAAACTAAAGCAACTCCTGAAGACAAGATTAAACTGGTGGAACAATATATGTCTGGAGAAATTAGCCAGCATGAGATCAGTCGAATTACTGGATTAATGGTCGCATCGATTCAGGATTGGATATGTAAATATAAAGCGGAAGGATCTGTTGTTTTCTTATCAACGAGTAAAAATCGGAAATATACGCCTGAACTTAAGGGGAAAGTGGTAAAAGAATATCTCTCTGGAAATGGGAGTTTATTAACGCTGTGTGAAAAATATAAAATTCGTTCCAAGACTCAAAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAAAAACCATTAACCCCTGTAGGGGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8938-10288 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIQO01000015.1 Pectinatus frisingensis strain MB360 PFRG_161.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8938 29 96.6 31 ............................T GTCGGAAGTCTGCAAAAATTCTTCCTGGAAA 8998 29 100.0 31 ............................. AATATGGTGCGCAGAGCACATTAAAGCACTA 9058 29 96.6 31 ............................T TTGAACAGTACGACAAAGGGCAGAAACGTAT 9118 29 96.6 31 ............................T ATATGCGCCGGAATATATATCTCTAAAGCAT 9178 29 100.0 31 ............................. TGATAGTGTTGGTGCTCTGCGTTGTGTATGT 9238 29 96.6 31 ............................G TAATACCAAGCGATTACAGGCAATTACCGAA 9298 29 100.0 31 ............................. CAAAGAATTTACGATATAGCGAAATAAGGAG 9358 29 100.0 31 ............................. TGAAAAAACACAAATGTAAAACAAAGTAGGG 9418 29 100.0 31 ............................. ATAAGCATTGCAACAACCATGACGCCATAGA 9478 29 96.6 32 ............................G CTTGCCTTATTGCCCATTGCCCATTGCCCATA 9539 29 96.6 31 ............................T TTCGGCTCCGCATTACGCCGGATTGCTCCGG 9599 29 100.0 31 ............................. AAATTAAATCCTTCTTTTTCAAGCAAAGATA 9659 29 96.6 31 ............................T CTGGATTACCTTTAACGGTTAATTGCACATT 9719 29 96.6 31 ............................T TCAAATTTAATTCGGCAGAAAGACTCTGAAT 9779 29 96.6 32 ............................T ATCATTTGCTTTGCATTAGTACCATAATCATC 9840 29 100.0 31 ............................. TCGGTATCAACTATACCGTACGAAAAATAAT 9900 29 100.0 31 ............................. CTGTAGACGGATATACTACTTACCTAGTGTA 9960 29 100.0 31 ............................. CATCTTTGATCTTAGCATTATTTTCAATCAG 10020 29 100.0 31 ............................. ATAGTTATAAAGGCAGAAATTACGATATTGC 10080 29 96.6 31 ............................T GACAAGTGGCCTGTATGGTATAAAGACGGAC 10140 29 100.0 31 ............................. TATGGCTCATAACTCTCCTCCCCATTGCTCC 10200 29 100.0 31 ............................. TGGATATACCGGAGATGGTAGTAAAAAAACT 10260 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.4 31 GTTATCCGCCGCATAGGCGGCTTAGAAAA # Left flank : GAATAGTTTAAATTTATCTAAATGGTTATATAGGCTTAATGATTATATTCATATAACCAAAGTAAGAAAAATACCGGATAGAATTAAAGGATATGCTGTTTATAAACGTTTTAGGGAAAAAAATTCTATTAGTAAAATAAGAAGGTACGCTGATTATCGCAATATTTCCTACAAGGAAGCTCAAAACAAATTAGCAATAAAAGAACAAGAGTGTAATTTGCCCTATATTCAGATGAAAAGTTGTACAAATAATAATAAGTTTAGTTTGTTTGTACAAAGGATTAAAACAGATGCTGTAATTAATTGGAAATTCAATTTTTATGGATTAAGTAATTCATCGGCTGTGCCGGAATTCTGAAATAATCTATTTTACCATTATTTTTTCATATATGAATAAATCCAATATTATCAAGCTTTTTGTCGTGAGCGTAAAATTTTGGTATTTTTAAAATAATTGCCGATAATACTGTAGTGATAGGGAAAATTCATTACTTATTGCA # Right flank : CAAAGTGGAGACACTATCGTAACAGAAAAGCGTTATCCGCCGCATAGGCGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGCATAGGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //