Array 1 50462-49458 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKOG01000023.1 Escherichia coli strain MOD1-EC1713 MOD1-EC1713_23_length_50507_cov_26.4165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50461 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 50400 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 50339 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 50278 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 50217 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 50156 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 50095 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 50034 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 49973 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 49912 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 49851 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 49790 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 49730 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 49669 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 49608 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 49547 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 49486 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1471-161 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKOG01000010.1 Escherichia coli strain MOD1-EC1713 MOD1-EC1713_10_length_80380_cov_25.0667, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1470 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 1409 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 1348 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 1287 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 1226 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 1165 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1104 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1043 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 982 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 921 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 860 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 799 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 738 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 677 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 616 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 555 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 494 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 433 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 372 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 311 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 250 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 189 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGTCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //