Array 1 625-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTCA010000097.1 Pseudomonas aeruginosa strain 174276 17-4276_S85_R1_001_(paired)_contig_97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================= ================== 624 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 564 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 504 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 444 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 384 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 324 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 264 28 100.0 87 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTCGTTCACTGCCGTGTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 149 28 67.9 33 NNNNNNNNN................... ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 88 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 28 28 96.4 0 ........T................... | ========== ====== ====== ====== ============================ ======================================================================================= ================== 10 28 96.4 38 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GTGTAGGCAGCTAAGAAATGCGTAGATGCCGCGATCATAGCGCGCCCTA # Right flank : A # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.48, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37996-38564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTCA010000084.1 Pseudomonas aeruginosa strain 174276 17-4276_S85_R1_001_(paired)_contig_84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37996 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 38056 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 38116 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 38176 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 38236 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38296 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38356 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38416 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38476 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38537 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : TGCATGCACATCGGCGAACTGCTGACGTGCTTGTTCACTGCCGTATAGGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 444-296 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTCA010000098.1 Pseudomonas aeruginosa strain 174276 17-4276_S85_R1_001_(paired)_contig_98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 443 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 383 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 323 28 71.4 0 ....................NNNNNNNN | ========== ====== ====== ====== ============================ ================================ ================== 3 28 90.5 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CCGTGTAGGCAGCTAAGAAACCGGACGCCCCTAATCTGGAGGGCTCCTGGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGTAGGCAGCTAAGAAACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGT # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //