Array 1 1353-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFYO01000049.1 Lacticaseibacillus paracasei strain M36 ctg49_00034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1352 36 100.0 30 .................................... TGTTCGCCGTACATCAATACCTTCGGAAAC 1286 36 100.0 30 .................................... TCCAGCCCGTGAAGTCGCCCGATAAATTCT 1220 36 100.0 30 .................................... CCTAGTGGGTTTTCTAACTTGAATGCCTAG 1154 36 100.0 30 .................................... TGCAGAATTTAACGCCTACGTTAAATCACT 1088 36 100.0 29 .................................... GGCCAAGGGGAAATGAAAGCCAGCATTAT 1023 36 100.0 30 .................................... CACCTTTGTAACGCTCGCCGCTAGGCGTCC 957 36 100.0 30 .................................... CATTAGGCGTAAAATGGATTGCTGAAACGG 891 36 100.0 30 .................................... AAATCATCAAGCGAGGGGTTATTTATATGC 825 36 100.0 30 .................................... CACAAAGGTTGCAACTGCAAAACGTATCAC 759 36 100.0 30 .................................... GGGTCACACTTACACCGAGTTTCATGATGT 693 36 100.0 30 .................................... AACCACTCGCGTTTTTTCGCCGTTTCCATA 627 36 100.0 30 .................................... CCTTGCAAGTCTTTTCAGATGGCGCCTATG 561 36 100.0 30 .................................... CAACAAAGTTGTATGGTGAAGGCGTTCACA 495 36 100.0 30 .................................... ATGGTTGCATTAAACTGGAGGTGTTTCACG 429 36 100.0 30 .................................... AATTATGGAAACTAATGTGAAGCATACAAC 363 36 100.0 30 .................................... AGTCGGCAGCGGCAGCAAAGTCATTGATTG 297 36 100.0 30 .................................... GGTTGACGCGCTGAAACAATCATGTTATAC 231 36 100.0 30 .................................... GACCACAATACATTGTTATGCCATAGTAAG 165 36 100.0 28 .................................... CAGTTAGCGGCAGCAAAGTCATTGATRG 101 36 100.0 30 .................................... TGGCTGTTATACGTTTATCGAAAAGGGTGA 35 34 94.4 0 ..................................-- | A [9] ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAAGATGGGGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGAAAGCTCGATCAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGTCAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGGTCTCATTGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTTGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : A # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 43-679 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFYO01000010.1 Lacticaseibacillus paracasei strain M36 ctg10_00044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43 28 100.0 33 ............................ TATGATTGTCGAATAGGAACCGTTACCGTCAAT 104 27 96.4 33 .....................-...... TGGTTGATCCGGCCGCTTATGTATCCGCACGGA 164 28 100.0 33 ............................ TGCGATTCACGAAGATTTTTATTTTGAATAGCA 225 28 100.0 33 ............................ TAACTTTCGTCCTATTTCTGTTCCTTCAGTCAA 286 28 100.0 33 ............................ TGAGCTTGTTAAGGACGACCCAGTTACCATCAA 347 28 100.0 33 ............................ CAATCTGGTTAACTACACCATCTTGATTGATAT 408 28 100.0 33 ............................ CTCAGGCAAGTTATCTGGCAAAAATCCAGATCG 469 28 100.0 33 ............................ CGTCTTTGCCGTCTCTTCAGGGGCAGATTACGG 530 28 100.0 33 ............................ CAAGCGAGAGAGGGCGAAACAGTGGCAAGAACG 591 28 100.0 33 ............................ CTAGGGGGTTAGATAATGCGAGCAATAAGCGTA 652 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GGGTGATCCCGAGCTGCAGGACTACTCACGATGGACGAATTAG # Right flank : CTTTATGAGTATCAGCGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAGGGATTGCGCGCATGAATCACTTTAAGGGACGCCACTTTCAAAAGGACATCATCTTAGTAGCCGTTGGCTACTATTTCAGATTCAGTCTCAGCTATCGTGACATCGTTGAATTGCTTCGGGATCGGGGTATCACTGTTCATCACACCACGGTCATGCGTTGGGTTCATCACTATGGCCCCATCTTTAAGGCTCTATGGCRTCGGCATCAAACAGCTCACGCTAAAAGTTGGCGAATCGATGAGACCTATATTCGAGTTAAAGGCCGTTGGGCCTATTTGTATCGCGCTATTGACAGTAACGGTTTGACCATGGATTTTGAGCTACGAAAACACCGCGATTATACCGCATCCTATCACTTTTTGAAGCGTCTCTTGACGACCAATGGTCGGCCTGATCGATTAGTCACTGATCAATATCGGGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 2 11138-13061 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFYO01000010.1 Lacticaseibacillus paracasei strain M36 ctg10_00044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 11138 28 100.0 33 ............................ CACGTCCCGCTTCGTCTCATTGTTCATCGTCAG 11199 28 100.0 33 ............................ CGCCTCGGCTTGATTGAGCACCTGAGCATACCA 11260 28 100.0 33 ............................ CTGTGTTTCCCATAGCACCCAACCCCCAATCCC 11321 28 100.0 33 ............................ CGTCATTGTGAGAATGCTGGCGTTCCCATTATA 11382 28 100.0 33 ............................ CTTTAAAAACTAAGGAGAAAAATCATGAATAAA 11443 28 100.0 33 ............................ CGTCATGCAAACAACAAGGGGGACAATATGAAG 11504 28 100.0 33 ............................ CAACACTTTTGCTCCGAAGGTTGATTCGATCGG 11565 28 100.0 33 ............................ TGGTGTTATCAATAAATTGATTGCCAACATAGT 11626 28 100.0 33 ............................ TGACAAGGCCAATACGGCTTAACAAAACATCAA 11687 28 100.0 33 ............................ CTATACTTTTACTGGTGCAGGCAAAACTTATCC 11748 28 100.0 33 ............................ TGGGCGAACCGTTGCACAGGACACGCCACAGCA 11809 28 100.0 33 ............................ TGGATTCGTCAAACTCTTAGTTTTGAGAATGAC 11870 28 100.0 33 ............................ CCATAGAAAGAGGCACAACGACACTCCCACCAG 11931 28 100.0 33 ............................ CACGCTGAAACAGATTTCGGTTGATGTTGCTCG 11992 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 12053 28 100.0 33 ............................ CAACGCTAGACGACGCAACTCAAGAACAAGTCG 12114 28 100.0 33 ............................ TTGACCAACCACGTTGATCCGAAAACCCAGGGA 12175 28 100.0 33 ............................ CTGGTTCAGATGGATAGGTCCCAGCATTAGGCA 12236 28 89.3 34 ........................GAT. CCAAGCTAACCTTTCGCCTAGATCGTCTTGATTT 12298 28 100.0 34 ............................ CAAAAGTCTGAACGCGTTTATCATCTCGATTTCA 12360 28 100.0 33 ............................ CCATAGCGGCGTCAACATTAGTACGCTCAATCT 12421 28 100.0 33 ............................ GGGGATGACTGTATGAACGAACGCAATGAAAAA 12482 28 92.9 34 .........................GT. CTTTCATGGTGCCCTCCTTATTGCTGTGGAGCAA 12544 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 12605 28 100.0 36 ............................ CACTTTGTATTTTTCCAGCCAWTTTCCCACTTCACG 12669 28 96.4 33 T........................... CGCTGTCTTGCCTCACGCACAGTTTCAGCAGCC 12730 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 12791 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 12852 28 100.0 33 ............................ AGCACAGACGCCGAAGGGAAGCATCGTTGCTTT 12913 28 100.0 32 ............................ CAAGCCATGAAAAAGCCGCTGGCCCGCATGCC 12973 28 100.0 33 ............................ CACACGATGACGAGCTTGGCAGTCACTCGGTCA 13034 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 32 28 99.3 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CCATWGCGCGTCAACATTAGTACGCTCAAATCTGTTTTCCCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34686-33493 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFYO01000048.1 Lacticaseibacillus paracasei strain M36 ctg48_00093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34685 36 100.0 30 .................................... TGGCGAAGAGCAATATCGTGCATTTCAGCG 34619 36 100.0 30 .................................... CATGGTTGACGTAAACAAGCAGCAAGCGGC 34553 36 97.2 30 ...................C................ TCTTCTCATAGGCACTCGCGATAATTGTGT 34487 36 100.0 30 .................................... GCTGAAGTATCTTGGCAGGAGGCATGGCTA 34421 36 100.0 30 .................................... AGGGGATTTAATTGGGCATGTGGTCACTCG 34355 36 97.2 30 ..............................G..... TGATTCGGTGAAAGTAGGTGCTCGCCTTGT 34289 36 100.0 30 .................................... AAGGACGGGCAGAGTTAGGAAAGAAGCCAT 34223 36 100.0 30 .................................... CAGACGAGCTCGGGATCAGCTACAATGCCT 34157 36 100.0 30 .................................... TCTTCCATCCTTGGCAGCTTGGCCGCTATC 34091 36 100.0 30 .................................... TGGCTGTTATACGTTTATCGAAAAGGGTGA 34025 36 100.0 30 .................................... CTTCCGTGCCTTTTCGCTTCCCGGCAATAC 33959 36 97.2 30 ........................G........... TTGCCGTCAATACTGTTCGCCCACGCGGTG 33893 36 100.0 30 .................................... AGATGGCCGTTGTAAATGACGACATCACAG 33827 36 100.0 30 .................................... CAGAATACTACATTGGCGAGCGTGAGGACG 33761 36 97.2 30 ..........................A......... ATTTGAGTAACCAGACTCAGATGTGCTTAT 33695 36 100.0 30 .................................... CCAAGGGCAGGTTTTCAACTGCCTTCTGGA 33629 36 97.2 0 ...................C................ - Deletion [33594] 33593 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTCGAGTTCTTCCCGCAATTGATG 33528 36 86.1 0 C............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 97.2 28 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : GCGTTCGKGHGDRTTATAY # Right flank : AAGCAGCAGTGATACTAAATTGAAGCTAAACTTGTCAAAAAGTGCCTCATCTTTTTGACAAAATAAGGTGTTTTACTATTTATTGTGTGAATCAAGCCCCGATATTTACAAAGCCGAATCTTTCAGCGGCCAACCTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCGACCTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAACGCGAAGGTCAAGATTAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //