Array 1 266801-270908 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHWT010000023.1 Yersinia frederiksenii isolate IP38178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 266801 28 100.0 32 ............................ AACACATTGCTAAAGGCGACCCGCTCGATGTG 266861 28 100.0 32 ............................ TGTACCACCAGAATCTTTAGAGCATTGAGATC 266921 28 100.0 32 ............................ AAAGGTTGGAACACTACTAGCCGGACTACGGT 266981 28 100.0 32 ............................ GAGATGAGAACCAACGGTCTGTAAATGCGGTG 267041 28 100.0 32 ............................ AGAATCGGACGATGTTTGGGTTAGCTTCGCGA 267101 28 100.0 32 ............................ GGCACATTGCGGCCTCTAATCCCGCAACTGAA 267161 28 100.0 32 ............................ AAAAACGGCAAAGCTGGTCACTGAATTTGCTA 267221 28 100.0 32 ............................ GTTACTTTTTCATCCAGCATCTTGCCGATGGT 267281 28 100.0 32 ............................ TGATATGTACACTCATATGTACACAACTCATT 267341 28 100.0 32 ............................ TGTATTAATAGGCAATCATCAGGGTTGAGATT 267401 28 100.0 32 ............................ TCCTGCATACCATCCGCGCAGTAATGCCATAA 267461 28 100.0 32 ............................ GAAAGGAAATTAAAATGGCTACTCAATACTTT 267521 28 100.0 32 ............................ ATTCACTGCAACAACGGTAAACGATGCATCGT 267581 28 100.0 32 ............................ AGAGAAACAAATCACCATTAATAGTTATAGAC 267641 28 100.0 32 ............................ ATTCATTCCGTGGCGGTGATGGTCTGGACATA 267701 28 100.0 32 ............................ ATAGCCATCATGGTGTTTAGGGTGATAATCAT 267761 28 100.0 32 ............................ ATGCCGGTTCATCGCACCATTTGATACAGTAA 267821 28 100.0 32 ............................ ACTGACGGCCTCAGCAAGGTAAGTAAGTTGCT 267881 28 100.0 32 ............................ AACAAGCTCTTTCGAGGTGGAGGAGTGAAGCT 267941 28 100.0 32 ............................ ATGACCAACGCATCCAGATTGACGTAATCACC 268001 28 100.0 32 ............................ GGCGGCCAGTGACCCCAACTAGCAGTCGGTCA 268061 28 100.0 32 ............................ AACTCGTCTGGCTTTGCAGAGCGCTGCTGAGT 268121 28 100.0 32 ............................ ATAACGCAATATTGTGAGATTGCGGTCATGAG 268181 28 100.0 32 ............................ AGAGGGCCACCAGCTAACCGCGCCGGAATTAT 268241 28 100.0 32 ............................ TGGATGATTATTTCTTTTGGGGAGTTATTATC 268301 28 100.0 32 ............................ TTGCATGTCGGTTATGAATTTGACGCCATGAT 268361 28 100.0 32 ............................ TGGTAGGCCTGTCGATTAATCTCGATGTGACC 268421 28 100.0 32 ............................ AGCACGCTTACACATGGCTTCGGTAATATCGG 268481 28 100.0 32 ............................ AATGCGAACGTGAAAACGCTTCAATAGAAATG 268541 28 100.0 32 ............................ AAGCAGTAAACGCATACTGATTGAGGTAACTC 268601 28 100.0 32 ............................ TTTCCACACGTTGCGTTGAGCTGCAACCGCTT 268661 28 100.0 32 ............................ CTGAGTTCAAGCGTAACGAGAACACAATCTAC 268721 28 100.0 32 ............................ AGCAATAGCAACCAAAGCAAAAGTAGTGACAT 268781 28 100.0 32 ............................ ATTAGATTTACGGATTGATACCCTCTCGTTGT 268841 28 100.0 32 ............................ TATAACTGGATAGTGAGCAAGTTAAATAAAAT 268901 28 100.0 32 ............................ ACAAAATATTCCTGAAATTATTCCGGTACCGG 268961 28 100.0 32 ............................ AATTTGGCTCAATCGGAACAAGCTTCCACCCT 269021 28 100.0 33 ............................ GTTAATGGAAACGGACAAACAACTAGCGTTTAT 269082 28 100.0 32 ............................ TAAACCGTCACTAATAACTTTCATGTTGCCGA 269142 28 100.0 32 ............................ CTAAGCCAGAATGACGACTCACTAGCATCTAC 269202 28 100.0 32 ............................ AACAATCGAAACAACACGTGTAGCCGAACCGC 269262 28 100.0 32 ............................ ATTGATATCAAGCCCCAAGACTTCACAGCATT 269322 28 100.0 32 ............................ TTGCGAGTAACACAACAACGAAAGACGTTACG 269382 28 100.0 32 ............................ TTACTCTAAATTTGATTGGAAAACGCATGTAT 269442 28 100.0 32 ............................ GATAGCGTGCGCCAAATTTACCAGTACAGGAA 269502 28 100.0 32 ............................ ATTCATCCAGCAAGAACTTGGCGTTGTGATCC 269562 28 100.0 32 ............................ AAATCACCCAAGCGCCCTACCAACTCTGCCAA 269622 28 100.0 32 ............................ AGATCGGCGCGTCAGGGATATGGATAACTATC 269682 28 100.0 32 ............................ TAAAAGTAAATTGTAATTCTGTATATTATCGT 269742 28 100.0 32 ............................ CACGCCAATTCCACCGCCGTAACCATAGCCAT 269802 28 100.0 32 ............................ GGCAATGTTGCGAATGCTAATCCGCGCATCAC 269862 28 100.0 32 ............................ TGCGTTATATATAGCCTCTGCCACATCAACAG 269922 28 100.0 32 ............................ AAGGAAGCATCGGATAAAGCCAAGCGTGAGAT 269982 28 100.0 32 ............................ AACCGGTCACGAACCGTCTTTCGGCTGGCGTC 270042 28 100.0 32 ............................ CGGATAAGATGGTGTCGCGAGATTTTCAAAGC 270102 28 100.0 32 ............................ ATAGATAGCTTCGCGCAAGCTACCCACACCGA 270162 28 100.0 32 ............................ AGCTAAGCGAGAGGCGTTCAGCGTGACTCGAT 270222 28 100.0 32 ............................ ACTGGCAGCGCGATTAATCAAGTTAATCAGTA 270282 28 100.0 32 ............................ AGCGCGGCCAGTGCAGCAATAATCAAGGTGAT 270342 28 100.0 32 ............................ TTGAGTCATATTTCCGCGCAACTGCATCGCGA 270402 28 100.0 32 ............................ TGCGACTATGAGATTGTCGGCCTGGGTGCATT 270462 28 100.0 32 ............................ GGTTTCGTCGGATATTCCAGCGAACACATTCG 270522 28 100.0 32 ............................ AATGTTTAAAGCAGACAATGCTAGGGTGTTCG 270582 28 100.0 32 ............................ AATGACGCGCGCGCATTTGCGGAGTATCAGCT 270642 28 100.0 32 ............................ TGATAGAACCGGATATTAATCAGGAGCTTTAC 270702 28 100.0 34 ............................ CCAGTGTCGGCGTCAACTACGGTAGTTACGCCTT 270764 28 100.0 32 ............................ GGTAGATGCTTTCGGCAGACTTACCCTAATTG 270824 28 100.0 30 ............................ AAAGACCTGGCTTGTTGATATAGAGGGATG 270882 27 78.6 0 ...............A....-GG...GC | ========== ====== ====== ====== ============================ ================================== ================== 69 28 99.7 32 GTTTGCTGCCGTACAGGCAGCTTAGAAA # Left flank : CGCAAGACATCGCTAATCTGATGCAGCAAAACTGGTTACAAGGTCTGCGTGACTACGTTCGATGCAGTGCGGTATTGCCAGTGCCTAAGGCAGTACAATACCGAACGGTGAGGCGAGTACAGGCAAAAAGCGCCCATAACAAGCGGCAGAGATCGATTGCTAAAGGGTGGCTAACTGAACAGCAGGCATTTGAACAAATTCCTGACACCCAACAGAAATCTCTTAGGTTGCCTTTTATTCAACTGCGTAGCCTTTCGAACGGCAATACGATGCGAATTTATATTCAGCATGGTGAATTGCGGGAACAAGCTCAGTTGGGAAGTTTTTCTGCCTACGGTCTAAGTAGCAGTACCACCATACCCTGGTTTTAACCCTTTTTTTTCGACTATTTCTAAGTCATTGTTTTATCATGGTGTAATTAAAGGGGGAGAAAAAAGGGTTTTCCTGTCACTATCCTGCTTTATGTTTAATAAACAGGGTGATGGCATATTTTTATTACG # Right flank : CAAGAAGTTATTCTCCACAACAACTAACTACGACGTGCATATCAGACCCGAAAGCGTATTTTCCTTGTACTTTCCATAACTTACAACCACTCTTAGCGGACGTGCCTTTACCCGCCGGGGATTTTTTCCCAACGTGCGTTTTTGGCCTGAAAGCGCTAGACGAAAATCAATTGGAATGTGAGTTGGCCGGGAGCTTATACAGCTAATCGATATTGAGTTTAACTATAAATATATAAATCAATAGAACTTTCAGCCCCAATACTACCTAAGAACCGATTCGTTTCTGCTGACCAATAGATAGATGGTTTTTCCCCATTCTCTACTTCGATTAAAAGAGAAAAAATGAACGTAACACCATATTTCTCTTTTATTTCTTCCAATACATTAATTTTACATTTTAATAGCGACAATAACTTTCTTGTTTGCTCATCTACATCATAGGACTCTTCCTTCTCCGTACAGATTGACCAACTAGTCTCTGTACTCGGTCTTTTTCTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCCCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //