Array 1 246974-246456 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYG01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain M-4949 NODE_2_length_725945_cov_63.623859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 246973 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 246912 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 246851 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 246790 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 246729 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 246668 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 246607 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 246546 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 246485 29 93.1 0 ............TC............... | A [246458] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 264841-263288 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYG01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain M-4949 NODE_2_length_725945_cov_63.623859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 264840 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 264779 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 264718 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 264657 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 264596 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 264535 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 264474 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 264413 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 264352 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 264291 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 264230 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 264169 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 264108 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 264047 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 263986 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 263925 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 263864 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 263803 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 263742 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 263681 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 263620 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 263559 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 263498 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 263437 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 263376 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 263315 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //