Array 1 38845-42294 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRM01000014.1 Shewanella algae strain MN-01 Sh_contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38845 28 100.0 32 ............................ GCCCTCGATGACGGCTCGCTTAACATCGAGCG 38905 28 100.0 32 ............................ TGACAAGCTACAGGGCACCGCCTTGGCGGTGA 38965 28 100.0 32 ............................ TTGGTGGTGAGCGTGTTCCGTGATGGTATACC 39025 28 100.0 32 ............................ GGTTGAAGTCGATTTGTAGAGCGAAAAAACCT 39085 28 100.0 32 ............................ AGCAGGATATTGCCAAAGTCGGAGCTTGAGTG 39145 28 100.0 32 ............................ ATTACTGCCCCAATAGACCTTGATAGACATAT 39205 28 100.0 32 ............................ ATAAGCCGCTTTTAACCGGCACCACGATATCT 39265 28 100.0 32 ............................ TTGCTGCGGTATTGGCTCTACTTCGATGCCTT 39325 28 100.0 32 ............................ AATAACGAACGGTACGGGGTTTTACACAACAA 39385 28 100.0 32 ............................ AGCGCCTTTAGCAACGTATGCAACATAGTTAT 39445 28 100.0 32 ............................ GCTGACAACTATCAGCAGCTTTGCAATGAGGG 39505 28 100.0 32 ............................ TCAGCTAAAATATTTACCTGGGCACCCCCTGT 39565 28 100.0 33 ............................ TAATGCTTGACCTCTTAGGATGGGGCGCTTTTC 39626 28 100.0 32 ............................ GTGAAGTGACAAATACTCAAGAACAGGCTTTT 39686 28 100.0 32 ............................ GGCAAGGCGCAAGTCAGCGGTTTTTATCTGAA 39746 28 100.0 32 ............................ CTCCCGCTGAAGCGGGTCCCTCCCTAACCAGC 39806 28 100.0 32 ............................ GACAGCGCATTGCGCTCCCAGTTGCTGGCTGC 39866 28 100.0 32 ............................ TTTTTGGCGCGACACCATCAGCTCATTGCCAT 39926 28 100.0 32 ............................ TCATCTATCCACACATCGACGGCCGAACCGTT 39986 28 100.0 32 ............................ CCCCGCCAGAGGGAAAGTAATTCTCTAAATTC 40046 28 100.0 32 ............................ GCGATATACCGATTGCTGCTGTTCGGATAGTT 40106 28 100.0 32 ............................ ACTAATGATGAGTTGGCCACGCTCTTGCCAGG 40166 28 100.0 32 ............................ AGGTAAAACCGCCGAGCAGCACGCCGCAGAGC 40226 28 100.0 32 ............................ ATGGCTGAACATCTGGAAGGTTGTTTTGGTTG 40286 28 100.0 32 ............................ TAAATACTTCGCTGCATCAGACTCGGTGAGTC 40346 28 100.0 32 ............................ TACCCCAAAACGCCCGGAACAGCCGCATTAAC 40406 28 100.0 32 ............................ GGTTTCATCAAAGTTGAACCAGCGGACGCCTG 40466 28 100.0 32 ............................ AGCGAGCCGAAACAATATTAAGGGCGGTTCTC 40526 28 100.0 32 ............................ TCTTTTGGCATCCAGTAAGGGACGCTGATATT 40586 28 100.0 32 ............................ CTTACCCTGAGCCGGGAAGATGTTGATGCGTT 40646 28 100.0 32 ............................ TGATGAATTCAGTCTCTTGCATCCTCGCTAAA 40706 28 100.0 32 ............................ ACACTTAAAAGGGAAGAAATCGAGTCGGAGTA 40766 28 100.0 32 ............................ GTTTGGGTATCGCGCTTACCAATCTTGGCCTG 40826 28 100.0 32 ............................ ATCAAGAAAGCCATCGTGAAAGAATTGAACGT 40886 28 100.0 32 ............................ AACACGGCGCGAGCGGCATTTACTATCGCTTC 40946 28 100.0 32 ............................ ATCAAAAGCATCGGGCGTATCATTCCCAGAAG 41006 28 100.0 33 ............................ CTCACGGGGCTGGCGACTTGGCTGCGCCGCCCG 41067 28 100.0 32 ............................ TTAACTAACAGATGAAAAAAGAAAGCGTCTGA 41127 28 100.0 32 ............................ AGCTACGAGCTGATTCGTCATGACTATGACAC 41187 28 100.0 32 ............................ AACCGCCACCGGATGAGTTCTCCAACCAAAAG 41247 28 100.0 32 ............................ TTGCCTTCTTCCGGGATATCCAGAGCCCAAGT 41307 28 100.0 32 ............................ GTTAAAACCCACACGCAGAATATCGAGGGCAA 41367 28 100.0 32 ............................ TTCCATAAGGTTCAGATTGCAGGAGTCCTCCA 41427 28 96.4 32 ............T............... ATGCGAGTGACAAAGGCTTGGAGAATAACGTT 41487 28 96.4 32 ............T............... TCAGTGTTGCCTCGGGTCCAGTGCCCGAGCCC 41547 28 96.4 32 ............T............... ACGGTAAAGCCTCGCATCATCATGCTTGAGAA 41607 28 96.4 32 ............T............... ATAACCCCCAATACCAATAGCCTGAATCAACA 41667 28 96.4 32 ............T............... GGTCGGCATCTGCTTTGGGCAATACAAAAAGA 41727 28 96.4 32 ............T............... GAGCGCATCAAGAACGAAGTTAACGAGCGCAT 41787 28 100.0 32 ............................ CGCTATAGCTGCGAAGTGGGTTCGGCTGGTAT 41847 28 96.4 32 ............T............... CGAAGGCGGCCATCCCAATTAGGCTACACTTG 41907 28 96.4 32 ............T............... TAACGGTAAAAAGCTGAGCGCAGGCGATCTGT 41967 28 96.4 32 ............T............... AGTAGAACCCCTATGCCTTATACTGAAAACAC 42027 28 100.0 32 ............................ ATTACAGACAACTCTGGCGTAAGCCAAACCAG 42087 28 96.4 32 ............T............... TGCGGCAGCAGTTCAGCCCTGGCTCTGGTATT 42147 28 96.4 32 ............T............... TAGATAAACGGGTAACAGTCATTGAGTCGAGG 42207 28 100.0 32 ............................ GTCCTTTCTTACGGGGGGTAACTCCACGGTCG 42267 28 92.9 0 ..........A.....A........... | ========== ====== ====== ====== ============================ ================================= ================== 58 28 99.2 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCTTTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTGTATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : AGTTCTTCTGGTGAATTACCCTTGAGCCTTGCCGTGCTGCGGGGATTTATCTACAACCTCAGCAATATCTGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTGAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTATCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACACCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCTACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //