Array 1 2560837-2557437 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014854.2 Blastochloris viridis strain DSM 133 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2560836 32 100.0 33 ................................ AGCCGGCGGATGTCGCACTCGATGTCGGAAAGC 2560771 32 100.0 34 ................................ GACGGTGCCGTCAGACTGTTGCGTCATCGATAGG 2560705 32 100.0 33 ................................ CGCGCCCGCGCCAGGCAGTTGCGTGACGAGCTC 2560640 32 100.0 34 ................................ GCCCGGTACATGAAAGAGGCCATCAGCAACGGTG 2560574 32 100.0 34 ................................ CGATTGCCGCCGCGCCGGTGGTGGTGCACGGCCA 2560508 32 100.0 32 ................................ AACAGCGTCGTGGGTCTTGACCGTGGCATAGC 2560444 32 100.0 34 ................................ CGGGAGCACATTCAGCACGAGGTGCTGGTCGACA 2560378 32 100.0 34 ................................ ATGCCCCAGCCGAATTTCTCGTTCTGGGTATCGG 2560312 32 100.0 35 ................................ GGACTCGGCGCGGTCGACTGGGCCACAGCCGAGCC 2560245 32 100.0 36 ................................ CCCGGCTACTACTTCGTCCGGCTCGACCTCGCCGAC 2560177 32 100.0 34 ................................ AAAAACCGCGGTGACATTTTTCGCGTGGTCGAGG 2560111 32 100.0 35 ................................ ACCTCGGCGATCTCGACCTTGGCGACCTCGGCCTC 2560044 32 100.0 33 ................................ GCCATGCCTCGCCGTCTCGGCGGTTTTGGTCGT 2559979 32 100.0 34 ................................ ATCTCGACCAGATCGAGCTTACCGTCCTCGCCGA 2559913 32 100.0 33 ................................ ATTGCCATGATCGTGTTCCTTAAGCGGTGCCAG 2559848 32 100.0 34 ................................ TTGGGGGCCTTGGGGCCGGTCCCCGTGAAGATGC 2559782 32 100.0 35 ................................ TCGTTGCTCCGGCTCGACATCGCCGATCCGCGATG 2559715 32 100.0 35 ................................ CAGCATAGGGCCGGTCAGGTTGACCCCGGCGAGGG 2559648 32 100.0 33 ................................ ACCTCCGAGACCTTCGCGAAGGGCGCCGCCTAT 2559583 32 100.0 33 ................................ ATCTACCACGCGCTGACACGGTCACCTGCGATC 2559518 32 100.0 34 ................................ TCGATCTCCGCCCGCCAGTGGGCATCGCGCTCCG 2559452 32 100.0 34 ................................ TCGATGATGCCGATCGGCGGGTGCTATTTTGTGC 2559386 32 100.0 35 ................................ CGCGTCGGCCGCACGGCCTGATCGATTTCGTCGGC 2559319 32 100.0 35 ................................ CTCCTCACCGCACCCGAGATGGCGCAGCACGACGC 2559252 32 100.0 34 ................................ GACGGCAAATCGAACAGCAGCAACGCGCGGTCGG 2559186 32 100.0 35 ................................ CCCTTGGCCGGCGCCCAGGCCGCCTTCCGGCGCGC 2559119 32 100.0 34 ................................ CGGTGTCGCTCGCTGACCCGGTCGGCGTCACCAA 2559053 32 100.0 34 ................................ GGCGACCGCCAGCCCGGTCAGCGGCTTGCATGGC 2558987 32 100.0 34 ................................ GTCGTCGCTGTCGCCATCGGCGATGACGCGGATC 2558921 32 100.0 35 ................................ CGCACGAAGCGGTCACGCGTCACCCGCTCGGCCAC 2558854 32 100.0 34 ................................ CTGGTCAATTCGTCGTCGTCCTGGTGGCGGTCGG 2558788 32 100.0 35 ................................ GGTTTCAAATTTGCGCGACATCGTGGCCCCCGGCC 2558721 32 100.0 35 ................................ AGACTGCCGAGAAGTATGCCGGGCGTGGAGACGGT 2558654 32 100.0 36 ................................ TATGAGCGACTGCACGCCAAGTGCGATAACACTACC 2558586 32 100.0 34 ................................ ACGTTCTCCCAATTGCGCACGATCAGCGCCGCGC 2558520 32 100.0 32 ................................ CTCGCCGCGCCAATCAAACTCCTCCGCTTGAA 2558456 32 100.0 34 ................................ GGCGTAGACCTGCGACACCTTGGTCACCTGTACC 2558390 32 100.0 34 ................................ GGTACAAGCCGGTGCGGCTGCTCTGGCCAAATGG 2558324 32 100.0 36 ................................ TTTGATTGCGATCGCCACCCCGCGCTTGGCCGCCAG 2558256 32 100.0 34 ................................ TGCTGACCGGCTCAGCACGCTCAAGAGCGTTCTG 2558190 32 100.0 33 ................................ CGCGCATGCATCGAGATAGCCTCGGCGTCGTGA 2558125 32 100.0 32 ................................ GATCCGTGACATGCCCCGACAATAATGGGCAA 2558061 32 100.0 35 ................................ GAAGTCGAGCCCGCCGTCGTCATCGCCGCGGCAGC 2557994 32 100.0 33 ................................ CGCCGCCATGGTGTCGTCGCGCGCTGGCCTGGG 2557929 32 100.0 33 ................................ AGCGCCAGCACATAGGCGCCGCTCTCGCGCCGG 2557864 32 100.0 35 ................................ GTCGTCCTCGCCAGCATTTGCAGCTGGGGTGCTTG 2557797 32 100.0 36 ................................ CCTAGAGAGAGATTTGGGGGTCAAGAACAGCAAGCG 2557729 32 100.0 35 ................................ CGGTCGCGGACGGCCTTGGGATCCTCGACGATACC 2557662 32 100.0 34 ................................ ACCTCACGCGCTCCGGCGCCTCGGGTGATCGAGC 2557596 32 100.0 34 ................................ GACAGCCCGTCACGGGCCGCGACCGCCCGAACCT 2557530 31 96.9 32 ............-................... AGGAAGCCGCCCGCCACCTGGCGGGCGCTCGT 2557467 31 96.9 0 .......-........................ | ========== ====== ====== ====== ================================ ==================================== ================== 52 32 99.9 34 GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC # Left flank : GTTCTGGTCACCTACGACGTCCGGACGTCCGATGCCGGCGGGACAAAACGTCTGCGCCGGGTGGCGAAGGCCTGCCGCGACTATGGACAGCGCGTGCAGTATTCGGTGTTCGAGATCGAGGTCGACCCGGCGCAGTGGGCAGCGCTCCGCGCGAGGCTGGAGGCGGTGATCGACCCGGCCCATGATAGCCTGCGCTATTATCATCTTGGCGCCAACGGGCAGCGCCGGGTGGAGCATGTCGGCGCCAAGCCCAACCTTGATCTCGACGGACCGCTGATCGTCTGAGCGGCGCGTCGAGGTTTCGGCGGCCCGGCGGCACGGTGCGCGAACCACAAGCGTGACCGCGCCCGGCGACACGTTCGCGCCAGTCCTAATAACCTGAAATTGCTATCGAAACATGGAAATTGGCGACACGTGCGGTCGCCGGGCGACCTCGCGCACCGAGGTTCGCGCATCCATGACCGTTTCGAACGTCAGGTTCGTGCGCTATCTGTAGGGCC # Right flank : ATGTCCAGCGAAGCGCGTTCTCAACCGTTCGCGACAAACGGTTTCATGATGGCGCCGCCTTCCTCAAGACCGAGAGCGGCTTCTGTGTCCTGCTGGTCAAGGCGCGCGGTCACCGGGACGCCGCCACCGTGGTCGGCCACACCGGGACGATTTCATCCGGCGAGCGGATTGCTTCACCGAGGCAGAATTCCGCGCGTGAACAAGCCGATGCAGCTGCGAAGATAGCGGATGCGCTCCTGGCGGTCCGGCCACTCAGGATCGCAGCCTTGAAGTTTCAAGGCCACCGCCCCGAACATCAGGTCCATGAGGGCCTTGGCTGCGACATTGGCATCGGCCACATCGATACGGCCGCGCATCCTCTGCATCTCCAGCCATCTGGCGAGGTCCTCGCGCGATCGTTCACCGCCGCGCTCCCGCAGCAGCGCGCGCAGTTCGGGGAACTCCCGCGCCTCGACGACAACGAAGCGGATCAGAGCCATCCGCTCGCGATCGGCCTCGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2726468-2725011 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014854.2 Blastochloris viridis strain DSM 133 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2726467 36 100.0 37 .................................... CCTGCGCGCCCTCTCCCGTGCCGATCCTGGATAGGTG 2726394 36 100.0 37 .................................... CGGATCGACGCTGAAGCCCCAATCGGCGCCGAACAAG 2726321 36 100.0 38 .................................... GCTCCAGGTAATGCGCCAGCACCTCGCCGATATCGGCC 2726247 36 100.0 42 .................................... AACGAGATGGCCGACCGCAACGACATCCGGGCCATCACGCGC 2726169 36 100.0 39 .................................... GGCGGTCGCCCACGTCATGCAGGAGGGCTGACCATGGCC 2726094 36 100.0 39 .................................... TTGCGCTGCCAACCCGCGCGACCATGGGGCAGTGGTACC 2726019 36 100.0 38 .................................... CGCCCGTCCCGGTCGCGGCGGCTCACGAGTACGCAGAG 2725945 36 100.0 37 .................................... GATCAAGCCGCGCAAGGACAAGACGACGCCTCAGCTG 2725872 36 100.0 39 .................................... CTCCCGATCAGTCGTCACGCTGTCATCGCGCATATTGGG 2725797 36 100.0 37 .................................... GGTGCGGCTGTCGGAGACCATCGAGACCACCTGGGCG 2725724 36 100.0 40 .................................... CCCGGATCATGTAGGCCCCGGTGTATACCTTGTTCCCGGG 2725648 36 100.0 38 .................................... CCACCCATTTAACGGGGGCACCAAACAGCCAGTGGTCG 2725574 36 100.0 38 .................................... CCAGGATGTCGGACCCGAGCTGGGTGCCGATGGCCACG 2725500 36 100.0 40 .................................... CGCGGTGGACACCGGCGTCACGACGCGGCGCGCGCTCCAG 2725424 36 100.0 39 .................................... CAAGCCCGCTGCGTGACGCCTCCCTGCTGGTGGTGGACG 2725349 36 100.0 41 .................................... CCTGCCGGGCGACGCGGATTGCCGCGGCGCGCAGTGCCGTG 2725272 36 100.0 39 .................................... CCGCGGCCGGGGTAGGCGTCGGTGCCCACCAGGAAGCGG 2725197 36 100.0 38 .................................... CATCGAGATGGCGACGGCTCATCTGACCGATGACGAGG 2725123 36 100.0 41 .................................... CCGTCTCGACGCGAGTGAGCGGCTTGAAGCTGATGGAGGCG 2725046 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 20 36 100.0 39 CTTCAATGAGGCCCGAGCGTGCTGCTCGGGAAAGGC # Left flank : CGTCGGCCAGGCTGCGCGTCCGGCGCGCCCATTTCGGCAGCAGCGCCGAGCTGAACCGGATTTTCTGCGCCGCCGGCACGTCCAAGCGGTCACGAACTTTCGCACGCTGAACCGCCACCGGCCCGATGCCGGTCTGGATCAGCCGCTCCGGGCCGTGCCCGTGCCGCACCATGCGGTCACGGCCGTCGGCCAGCTTCTCGGTCTTCAGGTCGCCCAGGAAGGCCGCAACCTCAGCCTCGATCGCCTGGGCCAAAAGCTGCCGCGCACCCGCGCGCAGCACCTCGGTCAGGGGATCGTCGATCTCGCCGGGCTGACGCAGCCGGACGACGGTGATAGTTTCACTCATGGCGTATCGCTCTCCTCTGGAGGGGTTGGGCAGGCTGGTTACCCGCCCCGATACGCCGCCTCTCTCACACCGTCATCACCCAGTTCCGGCCATAGCTCCGTGCTGCTCGGGAAAGGCTTGTCGGTTGCGGCGTGCAGAAGCCGCATCCCCACAG # Right flank : CCGCCCCCGCCATTTCCGAAGATCGTTCCGGGGCTTGCCGTGCGGGATGCGAGCGGTGCTGCCGGTCGCGTTGGCCGGACCGCGACGAAGCATGTTCGAACGTCTTTACGATGTCAAATAGCGTCGTGGCTACCGCGACTTGCGCCGATGCGAGCGCTGCCGCACAAATCTGCCTCGCCGCAGCGCTCGCGTCCAGGCCAGGCCATCGCCAGGACGCGATCATCGCCCTGCCGGCGGGTCGGGCCGCGCGGTCATGCGGTTTTCGGATGATCCGCTCGGCCCCTTTTTTCCGCTTTCCCACCCGGCCAGGCTTGCCTGCGTCCGGGCGCAGGCTGTTGTGGGAGAGGATGCCGAGCAATCGAAGATCGTGAGGCGGGTAAAACCGAGCCGGCTTGAAAAGCTCACCCGGCGCGGATTTCGCTTCGCTCATCCTCGCCGACCTCTCCCGCAAGGGGAGAGGGAAAAGGAAGAAGAGACCGAACTGACCAGCCGCAAAACCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGAGGCCCGAGCGTGCTGCTCGGGAAAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 3 3250558-3251791 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014854.2 Blastochloris viridis strain DSM 133 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3250558 37 100.0 37 ..................................... CTTCCAATCGACTTGCCGGCATCAAGCGATACGCTGC 3250632 37 100.0 39 ..................................... ATCCGCAACTGGGAAAACGTCAAGGCAGTGGTGGGCGGC 3250708 37 100.0 38 ..................................... CTAGGTGACCTGTCCAACACACCAAAGCTACCAGACCA 3250783 37 100.0 38 ..................................... GGCGTTTGGGACAAGGGGTGGAACGCGGCGGCCGAGAA 3250858 37 100.0 37 ..................................... GACCACCTATCAACGGCCATTGAGCGGCTCATAAGCA 3250932 37 100.0 39 ..................................... GCTTGTCAGGCTCAGTATTCAACAAGCCAACGCGTGTTA 3251008 37 100.0 41 ..................................... TTGGAACTGAATTGGGATGGACATGGCCAGGGTCGGTCACG 3251086 37 100.0 36 ..................................... CTCGACACCGGCGAGCTGATTACAGCGCCGCTGGCG 3251159 37 100.0 38 ..................................... ACGCCACGACCGAAGGCTGGCTTTGCGGATGCACAGAC 3251234 37 100.0 37 ..................................... CAGAAGGTCGTGTGACGCCGACCGCTGAAGATGCGGC 3251308 37 100.0 41 ..................................... GCGCCCCCCAGCACCGCGGTCGCCTCGGCCGAGGCCAGGGA 3251386 37 100.0 36 ..................................... GGCGTGCGCGGCCGGCGGGCGTCCGAGGTGACGGCG 3251459 37 100.0 39 ..................................... CAACTCACCCTCGACAACGGATTTTCGCTCACCGCGCCT 3251535 37 100.0 35 ..................................... AGCGTCAGCTCCACCGCCTTGTTGAGGGTCTTGAT 3251607 37 100.0 36 ..................................... CCGGCGCTGCCGGACGGCGCGGAGGTGCTGCACCGG 3251680 37 100.0 37 ..................................... GCGGCGACATCGTCGGTGCGGGCGCGGCTCTATCGCG 3251754 36 81.1 0 ....................G..A...-.GG...C.G | TC [3251777] ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 98.9 38 GTATTCCCCGAGTAATCCGCTCGGGCCTCATTGAAGC # Left flank : GAAATAAAGTACGATAACCAAAACCATGAAAGTGTCAGATCTGATGCAACCAGATCGGAAAAATACTCTAAATTTGAAATTATTATCCCTATATGTCCTCACGTCCAATCAGACTCCTGGGAGGACGCCCCCCCCGAAAACCCTGAGTTCAAGCAGGAATTTTCGGCGATGCCGGTTTCAAGACTGCGGATGGACCTTCCGGACCTCGCCTGAGAAGAATCTCGTCTCGTCCGGCAGTCACTCGGATCTGCGATCCCCGCTGTCACAATCGTCGGCGCTGACCCCGCGTTCGGAACGTGCCGCCTTACGGCGCGAGCGCTGCCGTGATATGCATTTCTCCCGTAAGCGCTCGCAGCTGTTTAGATCCTTGAATTTGAAGGGCTGTTTGCCAATGTGAAATACGTTCATGCCTTGTCGCACGTTGCGAGGCGAGACCGTTGACGCAGCTCTCGCAAGTACCTGTCTATTCTCCTGCGTAATCGAGCAAAAATCTGGCAGGG # Right flank : GCGCTGGGCTTCATCGCGACGGTCAACGTGACGCGCAAGCTGGGCGTGATCCTGCACGCGATATGGCACGCAGCACCTGCTACGTCCGCGACCCGATCGTCTCGCGGCGGCTGCGGCTGTGCCGTCACCCGTTCGATCCGGCCGATACGTCCGCCGCGCCGGACCGATCCGTGCCGCCGCCGTCTCGGCCACGCTTGAACGGCCAAATCCCGCCCTACAACGGCAAGGGCCGGGTGCGCTGCTTCGCGGCAGGCGCAGCCGCGGAGGCGAGGATGCCGTTCATCGAGCCTAAGCCCATCGCCGAATACCCCTGGTACCTGCGGCTGTTCTTCCGCAACCAGGTCCGCCGCTACGGCCAGGTGCTGTCGCCGTCCTGGCTGTGGGGGCGGCTGCCCGGCCATTTCCTCGGCCTTCTGATCCTGCTTGGCCTGTTCCAGCGCCGCGCCTTCCCGATCGACACCGCGCTGCGCAGCGCGCTGTCGGTGCGGGTGGCGCAGATC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGAGTAATCCGCTCGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.30,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //