Array 1 64114-63474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATJP010000025.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HS5302 NODE_25_72708_27_0123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64113 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 64052 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63991 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63930 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63869 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63808 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63747 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63686 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63625 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63564 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63503 29 96.6 0 A............................ | A [63476] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9170-7556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATJP010000082.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HS5302 NODE_82_14644_24_2184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9169 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 9108 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 9047 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 8986 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 8925 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 8864 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 8803 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 8742 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 8681 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 8620 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 8559 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8498 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8437 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8376 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8315 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8254 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8193 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8132 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8071 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8010 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 7949 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 7888 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7827 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 7766 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 7705 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7644 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7583 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //