Array 1 181291-182710 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJWJ01000001.1 Enterococcus faecalis strain EN880 NODE_1_length_807778_cov_41.3554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 181291 36 100.0 30 .................................... TTGAAACACATAATCATTAACCGCTTTTTG 181357 36 97.2 30 ......A............................. AAAATTCTTCTAACGTTTGCGCTGAAATAT 181423 36 100.0 30 .................................... TGTTTATTCTGCGGTTTCTCGCCAAATTAA 181489 36 100.0 30 .................................... CACTTCATATACCTTCTAAACGAGTTATTA 181555 36 100.0 30 .................................... GGATGTACCAGTTATTCTTGGTCTTTCAAA 181621 36 100.0 30 .................................... TGTTCCTCTTGATGGTGCTGACGGCAACCA 181687 36 100.0 29 .................................... TGTCTCTTTGATGGCTTCCTTTTTAACCA 181752 36 100.0 30 .................................... AAAAACCAGATTTAGAAACTATTAAAGATA 181818 36 100.0 30 .................................... GCTTTTTCTCCTGCAAACTCTTCGATCTGA 181884 36 100.0 30 .................................... CAACTAGTTCAGTAATTTCGCCTTCACTTT 181950 36 100.0 30 .................................... AAATCACGAGAAAGAACGGCTTCTTAGAGA 182016 36 100.0 29 .................................... TTTTTCTCTTTTTCGGTTGTTAGCTCTGG 182081 36 100.0 30 .................................... AAACGATACCTTATACCATTGAATATAATG 182147 36 100.0 30 .................................... CGTTCCATTGCTTTAAACTAGTATCGGAAG 182213 36 100.0 30 .................................... AGTTCGCTTATTCCCATCATGGCACAGACC 182279 36 100.0 30 .................................... AAAACAAGTAAAAGACGTGGGTAATCAGTT 182345 36 100.0 30 .................................... TGGAACATGAGAGTGGTTTAAACCCTGCTA 182411 36 100.0 30 .................................... GCACCTAGAACGACGTCAATCGGTTGGTTG 182477 36 100.0 30 .................................... GCAAAATGCCCGCTGCTATCTATTCAACGA 182543 36 100.0 30 .................................... TAAAGATGGCAATCCTAAGCCAAGGCTTGA 182609 36 100.0 30 .................................... ACGTGTCGTCGTAAGTTGTTGCAGTCCATG 182675 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Left flank : ATTTATTATCTCTTTCAGCAGCTAAAGAAATTGGCTCAAGAAACAAAGCAGTTGAAGTTTTTTATTTTTAGTAATAGAAGCTTGCCTTTACCGTATACGGAGGAAGATGTTGAGAAAACGATTTTGTTATATGATAAGTATCAGCAGTTGCCAGTTTTTGATGTTTTTCGTCAAAGTATTGAGCGACATTATCCAGATCAACTCTCTTGGACAAATCAACAACTAATTGATGCTTTTTATCGAGTCTGTCATTTTGTTGGTGATCAGTATACAAAAAATTATCTTTTACCTAAAGATATGATATTATTAAAATTGTTGAAGGAATTGTTAGACGACAATAGTGAGTGTGTCGAGACGTCGATGGAAAAGCTCACTGTATTGGAAGAACAATATTTTCGCGAACGGTTATTGCGGAAAGAGTGAGTCTGGAATTTTAACCGCGTAAAGTTATATTTTTTATCAAAAGGATTATTAATGAGATTTCAAATTTTAAATTTGAG # Right flank : CAATAAGGAAGTAGGTTGGATGTACAAACTCGCTTTTATACCCCAAATAATTTTCAAAAAAGCCATCCCCACTAAATGTTTAAATATAGTCATCTTTCTAGCATAATTATTTGTATCTGAAGCAACAGCCAAATTGGCTTCTTCAGATACTTTTTGTTATTTAATTTAAGAGTTTTCTCAGTTGTACCAACAAATTGATAACTTATAATTTTCAAGTCCTACATATAATGGTAAAATAGAATAGATTGAAATTAATTGGAGGAATAATGAATCGATGAAAAAAAGATTGCTATTATTTATTGGTTTGGCAAGTATACTTACTTTGACAGGATGTGCAAAATGGATTGATCGTGGTGAATCCATCACAGCGGTAGGCTCATCAGCTTTACAACCATTAGTAGAGACAGCGAGTGAGGAATATCAAAGCCAAAATCCGGGAAGATTTATTAATGTCCAAGGTGGCGGAAGCGGAACAGGTCTGAGTCAAGTCCAATCTGGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 148761-148526 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJWJ01000006.1 Enterococcus faecalis strain EN880 NODE_6_length_174772_cov_42.9111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 148760 37 97.3 29 ....................................T ATAACGTAAATCACAGTCTTTTGTAAGTC 148694 37 97.3 29 ....................................G AAACCTTTTTTTGCGTTTGATATTTCTGT 148628 37 100.0 29 ..................................... TTGAATCTGGCCAGCTGGCGCTAATTGTT 148562 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 98.0 29 GTTTTGGTACCATTCTAAACAACATGACTCTAAAACA # Left flank : TTCTCGCCAATGTTACAATATCAAACATATTATTTCCTCCCTGATTTGCCTCCACACAAAGAAACAAGCTTACCTGAATTGTTCATTTCCATTAGCGATGACTCCTTTTATCTACGAAACTAAAAGAAAATTCAAGTGAACTTTTCCAAAAAGTGTGAAAATGCATGTAATATAGAATAATTCCAATCTAAGTATACAACTTTCTGAGGCAGAAACCAAACAATACAGAAGCATTTCTCACAATTTTTTTAGGTGCTACCAAGATTTCTTCCCGTTCTTCTATCAATAAAAAAAGCCCTTCCTAAAAAAAGGAAGAACTAATCTCAATCTATCAACATTTTGACTTATCACTTGATTAGTTTTCGAAAATTGAAGCAGCTCGTCTTTGATGATAAAAATTCTAATCTTGTGATGAAAATTACGGATTGCTTGAGGTGATAGTTTGTTTTTTAACAACATGGCTCTAAAACAGGGGAGAAAAAGCCAAATCAAAAAAGTTT # Right flank : TCGGAGAATTATTTTTTCTCCATGATTCCGTAGTCGCATCACTTATCCATAGCTAGATTTCAGTTTAGAAGGTCTAATTTTTTTCTTCACGTTTATTATACCAAACTTTTTCCTTCTTGGCGGAAAAACCCACCATTTTTCAATGGTGGGTTTTCTTTATTTAGTAGCTGTAACAGCGAGCCAGATTTCACTATACTTAGCTTCTGCTGGTCCTTGATATTGCGTAAACGAAATTTCTGGTGCTGCAACGACTTGGTAACCAGATGAAGGCAACCATTCAGAGAATATCCTTGCCCAGGTTTCTTGTAAAGTTTGTGGGAAAGGACCTTCATTTGGAAAAACCGCCCATGTATGAGCAGGTACGCTTAGTTGCTCCAAATCTTCATAGGTATTTTCTTGCAAAGTGGCAAAGCCAATCATGTGTGTCATTTCTCCACCCTCTGTTGTTCGTCCCTCTTGAAAGTCAAAAGAAGCATTTACTACTTGATGAGGATATACAT # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCATTCTAAACAACATGACTCTAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //