Array 1 55907-55676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMSF010000015.1 Paenibacillus donghaensis strain 5E1-40 contig00015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 55906 32 96.9 34 ...............................A TTATTGATCAGGGTCAAAACAAATTTGTCAGCGT 55840 32 96.9 35 .............C.................. ATTCTATCCCACCTACCACTGCAATGAATTCATTA 55773 32 93.8 34 ............AC.................. CAAATTATTCACTTACGATTTCAATCTTACTTTA 55707 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 96.9 35 GTCGCATCCTATGTGGATGCGTGGATTGAAAG # Left flank : ATCATTTTGGAATTGATTTTACTAACCATAGGAGTCCCCCTCGAGAATGTTTCAATCCACTCATCCTTTTCAATCCGCATATCTAAGCAGGATGCGAATCCAATTTTCACGTTAGACTTGCGATATGAGCGAAATGATCGTCTAAGCATCCGTTATGTCCGTTAGGACTTCAGTGCCCGTTTCTCTTTTGACTAGTAATTTTTGACAAAAGGTATGCGTTATCCTGCTTTTTGCGGGAAAAAATTTGAATTTTATGCTCATTACGATGAAGGGGAGTGGGCTACGAGTATCGAATTGATTTAATAATGGAACAAGTGAATGTGAAGAGTTGGCGAAGGCTAGTGGTTTTAAGTGCGAATGAGAAGTGCACATAATTTTCCAGGGGGATTCGCACCAAAAATATCATTGTTTTTATACATAAATGGAATTAAAAGTTAAATCAGATGGTGATTATGAGGTTGAAAAACGGTTTTTGCAGCCATTTTGGCTTGAAAATCGGA # Right flank : TTGTCTGCCCATGATGTGAACTGGATCTTCACTAGGTCGCATCCCTCATAGATGCACGGTTTTATGATCACAACTACAAATCCCCCCACTCCGGTCTCATTCTGCACTCACTGCAGCTTGAGACTTTTTTATGTTCCATACCTCCAAAGAAATCACAAATGTAAAAATCCTCGGAGTGTTGTAAATATCCTCTATTTCAGGCTGGGTGCTCCCTTCTTATGATGAATATAGATTCTTTGCTTTCTCTGAAAGCGAGGGCAGGGAGTCGGACTATCTTACGAAAAAGGGTTTCGTAAAGCGGAAGGAGTAACAACATGAAACCGAAAGTAGACGCACAGCGCTCCATGACTAAACCGAACAGGAGCTTACATGCCAGGCTGGGCAGGCTGGGAAGTTCATCGACGTTTGTTGGTTATTTGTTTGTAGCCCCAATCCTGATTTTGATGGGAATCTGGTTTTATTATCCTCTGATTCAATCATTTATTTACAGCTTGCAGGAT # Questionable array : NO Score: 8.40 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 66565-65526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMSF010000001.1 Paenibacillus donghaensis strain 5E1-40 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 66564 32 100.0 39 ................................ CAAATCGTAGGAAACCCCCAAATCTGGCAGCTACCACAC 66493 32 100.0 35 ................................ CAAATCGCTTATAACAAAATGCATGTTACCGTCTG 66426 32 100.0 34 ................................ ACGGCTATGACGAACAGGAGAAGACGCTGCAAGA 66360 32 100.0 35 ................................ CTCTTGGCCTGGATGATAAGGAGTCAAAGCTGTGA 66293 32 100.0 36 ................................ GATATCGGAGGCGCTGACGCCAAGCTGTTTGAGTGT 66225 32 100.0 37 ................................ ATCATCTGTACTTAAAGCATAGTAAAGATCTGGGCGG 66156 32 96.9 35 ............A................... TTGTATGAAAACTGCTTTTCATATCTTGTACAATC 66089 32 93.8 33 ............A..........A........ GATCAACTCAAAAAACAAATGCAAGAAAATGAT 66024 32 96.9 34 ............A................... TTTCCATCAATTACATTCCCGAGCAGCAATCCAT 65958 32 96.9 35 ..........A..................... ACTTCATGTGTTATCTAAACCTATTCCTAACGTAA 65891 32 90.6 35 ..........T.AT.................. GCTGAAGCCATATTTTTCAGAGAGGTGAAGGAAAA 65824 32 90.6 33 ..........T.AT.................. CGCATGTCGCCGCGGTCCGGTGTAGCCGTTACG 65759 32 90.6 35 ..........T.AT.................. ATAGGCGTACCACCAGTATTATTGAATGGCATCGT 65692 32 90.6 33 ..........T.AT.................. GAAAATAAAATACTCGATGCAAGGGAAACGGAA 65627 32 96.9 38 ............A................... GTCACACGGGAGCGCACCGTATCACCAAAGCTGGATGG 65557 32 90.6 0 ............A.................GC | ========== ====== ====== ====== ================================ ======================================= ================== 16 32 95.9 35 GTTACTCCCTGCGCGGGAGTATGGATTGAAAG # Left flank : CAGCGCTGAAAAATGGGTACAAAACCCTTACATAGTAACGGTTCTTACGGCCATCATGACTAATTGGAGACAATTGCGAATGGGCTGAACACAATAACTGCACGAATCCTGCAATGTTGGGGGAAGGAACTACTTACTTAACGAAAATGAACGGCAAGAAAGATTGAAATTCAGGAAAAAATTGTGCGGTGGGAGTATAATATTAGGAAAAGGGAATTTTTAGGGGATGTGCTTTCTCGGCTCGTGACTCATGATAGTTTGTTGGTAATAGGCTAAAATAGGATCAGGACAAGAAAATTTTTCTTATACTAACTTGTACTAGAATATTCTGGTGCGAACCCCAAGTGTACATGAAATCCCCGGGGGATTCGCACCACCATATTTCATGCGGCTTTTGGTGTTTTTAAGTGGAATTTAAGCAGCAAATATTATGCCCAAATTAGGGATCCGGCAAATTAGAGCTGAAATCCCTTGTACGGCAAGGGCTGAAAAAGATCGGA # Right flank : CAACACAAAAGTATGCTTAGAAAACAAAAGTAGCGGAGGGGACGGAATCGATCTGGAGAAGCGGCAGCGTTCGCCTTTGTCTCCGAATTTCTACCGTTATGAAAAATATAATCATAGAAATTTGGAGACAACAGCGATCGGAAGAACGATCCGTAACCGTAGCGGCCGCCTTGCACAATGTAATTGTCATTATTGGTTTTGCGTGAGGCATACATAATCGCTCTGCAGAATTAGCACCAAAGACGATCCGTACCCGCAGCGTCCACCTAGCACGAAGTAAATGTTTTTACTTAGGTTTTGCGGGGGTGGGTACATAATCGCTCTGCAGAATTAGCACCAAAAGACGATCCGTACCCGCAGCGTCCACCTAGCACGAAGTAAATGTTTTTTATTTAGTTCTGCAGCGCGAGAAACCCCAACACAATGTAACAACTTCGGTTTACATCCCCTACCGCTTCCCTTATGATAGGCATAAGCATGGCGCAAAAATAATATGCATC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTCCCTGCGCGGGAGTATGGATTGAAAG # Alternate repeat : GTTACTCCCTTCATGGGAGTATGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : NA //