Array 1 1159052-1158244 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JABXNC010000003.1 Listeria monocytogenes strain 2014L-6652 NODE_1_length_1443386_cov_44.3894_ID_1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
   1159051	    29	  96.6	    36	..............A..............	ACATCCATATGAACATGAAAACATTTATACATTTTT 	
   1158986	    29	  96.6	    35	..............A..............	TACCATACACGAGTAGGCGCATAATTGTTACATTC  	
   1158922	    29	 100.0	    35	.............................	ATTGATGCCATAATCGGTTCTAACAACGGCATTCA  	
   1158858	    29	 100.0	    37	.............................	ACATACGGATGATATTAGCAATCTCCTCGTTTATCCC	
   1158792	    29	 100.0	    35	.............................	TTACTAGGAGACTTACTAGCACTTGAAGAACTACC  	
   1158728	    29	 100.0	    37	.............................	TAGCCACGGTGCCTTCTGCTGAAAATTGAGATACTTT	
   1158662	    29	 100.0	    37	.............................	AAACTACTAGTTTGCGATCTGTGCGGAGGCACTGGAA	
   1158596	    29	 100.0	    35	.............................	AATCAAGGCTGATACTACACAGCAAACTACTTCTT  	
   1158532	    29	  96.6	    37	..............A..............	TTGTTATGAGGATTTTAAATAATAGTTATAGCTCCGA	
   1158466	    29	 100.0	    36	.............................	ATACCTTTTGCAACTTTAAGCAACCGTGAATGGAGT 	
   1158401	    29	  96.6	    36	..............A..............	CGCTTCGGCTCTCCGTTCAAATTTACTTCTGGATAC 	
   1158336	    29	  86.2	    35	A.............AA.....G.......	AACTTTGGCAATGACTTTTATTCAAATGTAGAAGA  	
   1158272	    29	  82.8	     0	......A........CA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        13	    29	  96.6	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                     	       

# Left flank :   GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCAGGGATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  CTCATTCAGATTTAACTCCACCACCATCCACCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA

# Questionable array : NO	 Score: 6.05
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   GTTTTAGTTACTTAATGTGAAATGTAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [10-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//