Array 1 164786-160858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRRF01000004.1 Klebsiella pneumoniae strain UMNturkey9 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164785 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 164726 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 164665 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 164604 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 164543 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 164482 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 164421 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 164360 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 164299 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 164238 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 164177 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 164116 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 164055 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 163994 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 163933 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 163872 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 163811 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 163750 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 163689 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 163628 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 163567 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 163506 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 163445 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 163384 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 163323 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 163262 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 163201 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 163140 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 163079 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 163018 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 162957 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 162896 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 162835 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 162774 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 162713 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 162652 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 162591 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 162530 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 162469 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 162408 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 162347 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 162286 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 162225 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 162164 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 162103 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 162042 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 161981 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 161920 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 161859 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 161798 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 161737 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 161676 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 161615 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 161554 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 161493 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 161432 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 161371 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 161310 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 161249 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 161188 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 161127 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 161066 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 161005 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 160944 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 160886 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //