Array 1 62577-62784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEPB010000013.1 Dickeya dadantii strain Yana2-2 Yana2-2_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62577 28 100.0 31 ............................ CCGAACGTGTCCGGCATCCCTTCAGTGAGGG 62636 28 100.0 32 ............................ TACCATGACCCGGACAAATATGACCGTATCGA 62696 28 96.4 32 ............G............... GTGAGACTTACGCATACGATAGTATTCACGAA 62756 27 82.1 0 ...........C.C.........-..CC | GG [62777] ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGTCACGGAAATCCCACCCATGGCGATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTACCCACTCCACTTTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCATAATCGCCATCGGCGCGCAGCGACGTGTACGGCTTATAGTCGCCGGTAGTGCAAACCTTCAGCACCCCTTGTTCCTGCACCTGATCAAGATGAGACGCGGCGCTGGCGCCGCCGGCCAGCCCCAACAACAGAATGAGTGAAAACCGTTTTTTCATGAGAGTTCCTTGCAAGCCTGTCAGGCAAAAGCGCCACTGTATCATGCCGTTTCTACGGCTGCCGGTTTTGACCCTTTTTTTTCGCCTTGTTATAACTCATTGATTTTTAATGACGACAATGATCGACGTTAAAAAAGGGTTTTCCAGGAAAAATCCCGATTTCCCTTTTAAAATCAGGTAATAGGCGATAAATTGCTACG # Right flank : GGTTTGCTGGCGTTAAAAACTACGCT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43264-42963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEPB010000047.1 Dickeya dadantii strain Yana2-2 Yana2-2_contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 43263 32 100.0 34 ................................ ATGGAGGTGCTGAATACCGGTCATCCGGGCACCA 43197 32 93.8 34 ..T...............G............. GATATCGACACCGCCGTCGGCGTGCAACTGGATA 43131 32 93.8 35 ........C.........T............. AACTCCGTTAATGAGCAGGGCAATCGGCTCATGGT 43064 32 93.8 34 ..........T.......G............. TGCCAGACATGCCAGATTGCTGCATCTGTCTCCT 42998 32 87.5 0 ..................G...C......T.T | C,ACA [42970,42974] ========== ====== ====== ====== ================================ =================================== ================== 5 32 93.8 34 GTCGCGCCTCACGCAGGCACGTGGATTGAAAC # Left flank : GCGCGTGGATTGAAACTTGTCGCCGTCAAGAAGGGTGCGGTGCAGGTAGCA # Right flank : TTGATTCGCCGGTTAACGCGGCGACGGCGGGTCCGCTTCAAACAGCGGCAACGGCTTGCCGATGATGTAGCGCTGGCGCAGGTGCGCGGACAAGGCATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACGTCCCAGTTCCACAGCCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACAAACCCCAGCACCGCCGCCGATCGCACGTTGGACTCCATCTGGTACAGGCTTAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGCTTTTGCAGGCTGTTGGCGCCGACTGCGCCCAGTCCGCGGCTGGGCGATCGCTCGACCGCTTCGTGCCCTTCCGCGTACAGCTTGCCGAGCAGACCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACGAAAATCAGCCCCCAAATCGCCATGTCGATGCCGCGCA # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACGCAGGCACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 8773-8921 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEPB010000102.1 Dickeya dadantii strain Yana2-2 Yana2-2_contig_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8773 28 100.0 32 ............................ AGCTTGCTCAGCCATTGGTGTGGCAGGGGTTT 8833 28 100.0 33 ............................ GCGGCGGAGCGGCCCAAGCACTACCGCTTCTAT 8894 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCCCTGCCGTAGCGATAGACAAACACCACCCGCGCAATAAAACGCAGGCTAATAATTAATTGAAAAATACGGATACCCTAAATAATTCGAGTTGCAGCAAGGCGGCGACGCAGCGAATCCCCGGGAGCTTACTCAAGTAAGTGACCGGGGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATCCACTGGAAAGTAACGAAAATCAGCCTATCACAGCCCAAACAGGAAAGTGAATGACGCCCGAAATACTTTTCCCGCCGCTATACCCTTTTTTCAACCGTCTTTTTCGGCATTTAAAAATCAATAAGTTAAAGGTAGCCGAGAAAAAAGGGTCTAACGGTGAAAATCGCCAATTGCGGGTCAGAATACAAAGGGTTAGAGTCAACTCGCTACG # Right flank : ACATTGTTCGGAATTACCGGACAACTGGAGCAAGTTTCAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //