Array 1 1324-173 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNGJ01000021.1 Prevotella buccalis strain UMB0536 .16933_8_22.21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1323 36 100.0 29 .................................... GTCAATTAATGAGTTCTTAACATACATTC 1258 36 100.0 30 .................................... TCAGAAATAAAGCGACCTTGCAACGGCTGC 1192 36 100.0 29 .................................... GGGTTAGGTGCTATCGCTATGGGGACTGC 1127 36 100.0 29 .................................... TATTAAAAGTAGGGGGTACCCGAAAGTTC 1062 36 100.0 30 .................................... ATTTGAAAGAAAAGAGTTATTAAAGTCGTT 996 36 100.0 29 .................................... GAATTAGGTTGCTTTATATCAACTGTATA 931 36 100.0 29 .................................... CACGCACATTTTGCATGGACATTTTATAT 866 36 100.0 30 .................................... TAACTGTCTGGAAATCCCATAATGCGTTTC 800 36 100.0 29 .................................... ATTTTATTGTGCAAAGGTAGCGTGGCCTC 735 36 100.0 29 .................................... AATTTGATGGGTACCAGTCGGATCATATA 670 36 100.0 29 .................................... CGTCGGATGCTTGGGAAAAAATCTCTAAG 605 36 100.0 30 .................................... TTCACACTTCAAAGGTAAATCACCTCAAAC 539 36 100.0 29 .................................... CTAGTATAAGAATCTTCAAGATAGATCGA 474 36 100.0 30 .................................... ATTTGACAGCTCGACTATTTCCTCTATGAT 408 36 100.0 30 .................................... CATACCATGTTCGTGGGCATCAAATTCAAT 342 36 100.0 30 .................................... CGGGAGTGGTGCTATCGCTATGGGGGCAGC 276 36 100.0 29 .................................... CCGAAGGGTTGTTTTTAGCACTTACAATA 211 36 91.7 0 .............................CT..C.. | T,C,C [177,183,185] ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.5 29 GTTGTGGTTTGATGTAGAATCAAGATATAAAGCAAC # Left flank : CAATGACAATGGCTTCTCTTGTGAAATATTATGCCAAAGAAGTAAAGAAAATCAGTTTGCCTCTTTTGAAATGAGTGAGAACCGACTAAATGCTTATCATGTTATGTGGTTATTTGTAATGTTCGATTTACCCACTGTTACAAAGAAAGATAAGAAGGAGGCTGCACGTTTTCGTAAAGAATTAGAGAAAGATGGATTTACGATGTATCAATATAGCATCTATATTAGATATTGCGGTTCGCAGGAAAGCGCAAACGTTCATATCAAAAGAGTTAAATCAATCTTAACACCAAGTGGTAAAGTTAGTATTTTAACAGTTACAGACAAACAGTATTCAAAGATTATCAATATGTGGGGTGAAATTAAACAAAAAGCTCAAGAAACACCTATTCAGTTAGAGTTTTTTTAGTATATTTGCAATAATTCTGATATATTCGAGCCACTTCTTGTATGAAAATATTTGTATAATATGCTTATATTCAATATTTTAAATAGTACAT # Right flank : CGAAAATCCTTTAACATTTCAAAAAGTAACAAATTGATAGTTACCCATCAAAATTGAGGCAGAGCTGCAGGTTTTTTCCTTCAGTAAATTCTTCCTCTTTCTGTTCAATGAGCAAGTCACACAATGGCATTTTTGTCAACAATGCCGTGCTTAAAATTCTTAGAACATCATAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGAATCAAGATATAAAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 1541-131 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNGJ01000006.1 Prevotella buccalis strain UMB0536 .16933_8_22.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1540 36 88.9 30 ...T...C.................T.....G.... ATGACGGTGAATTCCGCTGGTACTTTACAT 1474 36 97.2 29 .........C.......................... AATAGGGCTACTTTGAATTTCTTCTTTGT 1409 36 97.2 30 .......C............................ AGTTATCAGAAACGTGTAGAGGAGATAAAC 1343 36 97.2 29 .......C............................ GCATTGCTGACCAACAAGCCTGTGTTACC 1278 36 100.0 30 .................................... CAGTGGAGTGATCCGTTCGGTTTCCCTGCT 1212 36 100.0 30 .................................... AGGTAGCGGTTCTGGCCATATTGAATTTGA 1146 36 100.0 29 .................................... AAGTAGGCACGGATGCTGTTTCGAAGTTA 1081 36 100.0 30 .................................... AATTCTGTCTTCAACGTGCCGTATGCTTCT 1015 36 100.0 29 .................................... AATGCTCGCCATCCTTACGAAATATTAAA 950 36 100.0 29 .................................... AAGAGTACGTATTCACTCAATCGGATAAT 885 36 100.0 29 .................................... CAGCACTGCGTGAGTAGTGTTGCCGCTTA 820 36 100.0 30 .................................... TTGAATTAAAGTCGGATTGGAATGATAATA 754 36 100.0 30 .................................... CCTCATGAAGTACAACGATGACGTGCGATG 688 36 100.0 29 .................................... ACACAACCCCCAGTATTTTTCTTCCATCA 623 36 100.0 30 .................................... TATTATGTAAGGAAGTTTTATAACGATACC 557 36 100.0 29 .................................... AGACACAACGCCCCGTATATCCTTGCTCG 492 36 100.0 29 .................................... GTTTACGGTTGGTATGTATGCTGCTGGTG 427 36 100.0 29 .................................... CTTAATCAATTTCTCCATGCCCACCGTCA 362 36 100.0 29 .................................... TGTATAGCTCTCTGGGTGGGCTTCGGACA 297 36 100.0 30 .................................... AGTGAGAATGTCGTATCACCCGTGCCATGA 231 36 100.0 29 .................................... GCAACAAGTTCCTCGAAGGAATAGTACTT 166 35 80.6 0 ....................-..TA.TGT......A | G [133] ========== ====== ====== ====== ==================================== ============================== ================== 22 36 98.2 29 GTTGCTTTATATCTTGATTCTACATCAAACCACAAC # Left flank : TTTTATATAAGTTCCATTCTGAAAATAATGGTAGCTTGCATAAACAATTTCTTTTTGATTTAAACCAATTAAAGATTGATAAAATTTATCGATATATTTGGCCCTTGATTTAGTATTATATACACTTGTTTTTATCATTAAAATAGGAAAATTATTTGTGACACCTAAAAAAATGTCATCATAAATGTTTGAAATAACAAGTAAATCTGTATTGTTTTTCTTACATATATCTTCTAATGTGTTTAGAGGTAAACAAAAAGAAGACTTACAAAATGGTGTATAATCATATATTATAACGTTGTTATGATTTGAAAGATATTCTTTTACTTGTTCTACAGTAACGTTATAAACATTAGTAAAATCGGATATATTATCGATTTTACCATTGTAATCAATTATTTTTTCTTTTTGTTGTTTTGATAAATGATTGTAACCAGATGTTAGTCCTGATATCTGACAAGATACCAGAACCAAACAAGTTAAAAGAGAAATTGAAACGA # Right flank : AATCTTTTAACAATCTCTTGAAACACCTATAAATACAAGCTTATAGGAGATAAAATAGACTCCCTACTTTTGAAAAGAGTATCTTTGCCGCAAATTACAATTTGAAAGCAGATACTTATGAACAAAGGTCG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTTTATATCTTGATTCTACATCAAACCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //