Array 1 1663248-1662914 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPLE01000001.1 Streptomyces viridifaciens strain DSM 40239 map unlocalized plasmid unnamed scaffold1_size, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1663247 29 100.0 32 ............................. TTCGAGACTTCGTCGATGGCCAGCAGGATGAG 1663186 29 96.6 32 ............................C GAGCATCGCGGCGTGCCGGACCGCCCAGCGCA 1663125 29 100.0 32 ............................. CTCTACTCGCTCTCGCAGATCGACGGCGACGA 1663064 29 100.0 32 ............................. ATCCCTTCCCAGAGACGGAGTTGGGTCGTTGG 1663003 29 100.0 32 ............................. TTGGGCCGCCATGGGGTCCAGGTGGTCACGGT 1662942 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 CTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : CCTGGTTNNNTCCGGACAACGCAGCAACGAGATTGCCCGATTGAGGGTGGGCCTGCACCCGTTGCAGCACGACGGCACCCCCATCACCGGTGACTCCCAGCAGATCCTGGCCCGCGAGACCGTCTGTCTCCTCGACATCCCACCCCACAAGACCGGCACCGCCTTCACCAAACCAGTCGACCCGATCCTCTGCCAGGCCGTCGATGCCTGGCAGGCCGTCCGCCCGGATCAGCCGAAGTTCACCGACCGCCGCACCGGCGAGCGCGTCGACCTGCTGTTCACCCTCCGGGCCTGCCGCGTCCGCTGCGCGGAGGTCGTCCCGCGCCTGCGGGGTCCCCTGTCGGTCCTCCCCACCAGCACGGGGCCGCCGCGAACTCGTCAAACACCGACCATGCGCCGTGACACGATGAGAACCCGCACCTTGACACCACAACAGCACACCACGTCGCGCAACCAGTCAAGAAACAGCAAAGCCGCTACTGCACCGCAGGTCAGAAAGC # Right flank : CGCCGACTCGGACGGAAACGCTCCCGAAGCCCCTCCTCCCCGCACCTTGAGTTCTAGGGATCGTTGCAACGCCCCAGCTGGGGAGTGCAATGACCTTCGATATCCGCGAGGACCGGCGGCCGCAGGGGCCCAGGAAGCTCCGTGCCGAGCGGGAGGAATACTTCCGGCTCGTGCAACAGGGCTACAGCAGCAAAGAGGCGTCCCGGCTGGTGGGCGTTCACCCGCGTACGGGACGTGAGTGGCGCAACGGCCGGACGGACCCGAAGAGGTTCAGGGCGCCCGCTCGACCCGAGCGGGCGCCCTCCCGTGCGTCCGGCGGGTCCCGGTATCTGCGTGAGGACGAGCGCATCCACATCGCCGACCGGCTGCGTGAGAAGGCCACCGTGCGCGCGATCGCGGCCGAGCTGGGTCGCAGTCCGTCCACGGTCTGAAGTTCCACCCTGTGGTTGGACACTCTCCGTCTACGCTGCGAGGGTGTGACCTTGCCGGTGCCGCTGGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1670742-1669656 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPLE01000001.1 Streptomyces viridifaciens strain DSM 40239 map unlocalized plasmid unnamed scaffold1_size, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================================== ================== 1670741 29 93.1 46 C............T............... GACAGCCGGGACAGCACTGACACCAAGTCCGCCTCCTCCCCGCACC A [1670737] 1670665 28 75.9 163 ..CG.......G..T..-......CC... TCGGCCTTCCCCACCAGCACGGGCCCGCCGCGGACTTGTCAAACGCCGACCATGCGCTGCGTGACACGATAAGAACTCGCACCTTGACACCCCAACAGCACACCAAGTCGCGCAGACCAGTCGAGAAACAGCAAAGCCGCTGCTGCGCCGCAGGTCAGAAAGC 1670474 29 79.3 31 CTC........G.GG.............. GTGGTGCCGTCCTCGGCGGTCTTGGTAACCG 1670414 29 86.2 32 T..........G.GG.............. CCCAGGTCTTCGACTGGCTGGTGGAGGACGTA C [1670410] 1670352 26 79.3 32 .TC............---........G.. TCCTTCCGGCTCCGGTGAGGTGCGAACTCACC 1670294 29 100.0 32 ............................. GACATGACCGAAAAGGAGCTGATCCGGGCCAC 1670233 29 96.6 32 .T........................... CGGCCGGGGGGCAGCAGGGGCAGCAGCACGCT 1670172 29 86.2 31 .TC....T..........A.......... CGGAGCGGGTGGCCGCCGTCGCGGTGGACGT 1670111 29 82.8 32 .TC...........T..A....A...... CTGTCGTCGCCCAGGTCCCGCAGCGTCTTGGC 1670050 29 79.3 31 CTC..T..T.....T.............. TCCCACTGCGTCGACCCGCAGTCCGACGGAC 1669990 29 100.0 31 ............................. AGCGGCCCGGACCGGAGTTGGTGCAGATGTA C [1669986] 1669929 29 89.7 32 .TC.....T.................... TTCTGCTGGACGTCGGCCCAGCCCTCGATGCT 1669868 29 93.1 31 .TC.......................... GGTGGCCGCCGTGGCCGCCTCGTATCGCGAG 1669807 29 89.7 32 .TC..............A........... CGGTCACCCGGGTCCTACAGGCCGGCCAGTAC 1669746 29 82.8 32 .TC.....T.....T.......G...... CCGGTCGACGGAAGCTCGTACGTCGGGGCGTC C [1669729] 1669684 29 79.3 0 .TC......A.G.AG.............. | ========== ====== ====== ====== ============================= =================================================================================================================================================================== ================== 16 29 87.1 41 GCTCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : CGTGGCGGCGAAGATCCGCCGCCAGCTCGACCGCCGCGTCGATGAGCTCGGTTGCATCAGCGGGTCCGGAAACCTCGACCTGCCAGGCTCCCCCAACTGGTACATGCCTGACCTTGCGGTCATCCCCGAAGACCTGGCCAAAGGCGCGGGCGCTCTCACCCCCGACCAGACCCTCCTGGTCGTCGAGGTCACCTCCGAGTCCAATGGCGACACCGACCGTGTCACCAAGCGCAAGCGCTACGCCCAGTACGGCGCCCCGCTCTACTTGCTCGCCGACCGGCAGAACCGCACCTGCACCCTGTTCTCCGAGCCGCACGACCTCGGCTACGCCGTCATCGACGGTCCCCACCCGTTCGGGACCGCGCTCCGGCTGCCGGAGCCGTTCAATCTGACCCTGGACACCACCGCTTTCTGACCACACGAGGCCAGCCCGAGCACACCAAGCCCAACCGGCCAGTCAAGAAAACAGCAAAGCCGCTGCTGCGCCGCAGGCCAGAAAG # Right flank : GTGCCGATCGCGCCGAGGTAGGACAGCGGGCCGTCCTCCTGTCGGCAACGGCCCAATTTGAGGCCGGTCTCAACGGTTCAATCGTCGGCCATCGTGCGCTCTCGCTGGCTCAGTCGTTGTCGGCGGCGGTGGGGACGCGGCCGAGTTCGCGGCCCCGCATGCGGTAGGACTCGCCCTTGAGGGAGTGGACCTCGGCGTGGTGGACGAGTCGGTCGATCATCGCGGCGGCGACGGTCTCGTCGCCGAACGTCTCTCCCCAGCGTCCGAAGGGCTTGTTCGAGGTGACGATTACGCTCGCCCGTTCGTATCTGTTCGAGATCAGCTGGAAGAACAGGTTCGCCGCCTCGGCCTCAAACGGGATATACCCCACCTCGTCGATCACGATCAGCGGGTAGCGGCCGAGCTTGACCAGCTCATCCTGGAGCCGGCCGGTGTGATGGGCGGCGGCCAGGCGGTCGACCCACTGGGCGGCGGTGGCGAACGCGACCCGGTGGCCGGCC # Questionable array : NO Score: 4.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:0, 6:0.25, 7:-0.81, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1674396-1671522 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPLE01000001.1 Streptomyces viridifaciens strain DSM 40239 map unlocalized plasmid unnamed scaffold1_size, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1674395 29 89.7 32 C..........A..T.............. TGGCCGAAGCCTCCGGCAGGTGCGCTCGAAGG 1674334 29 86.2 32 C..........A..T.............C GTCATCATCGCGGTCAGCCTCGCCATCGGCTG 1674273 29 89.7 32 C..........A..T.............. TCGGTGGCGACGCCGAGCATGTGCTTGAACTC 1674212 29 100.0 33 ............................. GAGCGCGAGGACGCCCTCGGCTGCGGGCGCCCA 1674150 29 96.6 32 ...........A................. GTTCTGTCCATCGGTTCCGCGATCGTGACCGT 1674089 29 100.0 32 ............................. GGCACGATCTCCCAGTCGTCCGGCGGGGGGAT G [1674067] 1674027 29 100.0 32 ............................. AGGCGCTAGGAATGCGCCAGGAGGTCATGCCC 1673966 29 100.0 32 ............................. CCCCCGGGACCGGCCCCAACTCGTGATCCACG 1673905 29 93.1 24 ..........GA................. GCGAGCCGGCGGACCGTGCCGTAC Deletion [1673853] 1673852 28 82.8 32 CA......-.....T.T............ CTGATGAACAGGACTACGGTCTTGGCGTCCGT 1673792 29 89.7 30 ..............TA.C........... GGGTTCCACCGCCTGGGCCGTTGTGCTGGA 1673733 27 89.7 32 ........--....T.............. GTCGCGCCGGTCATGTCCCGCAGGGGCTTGGC 1673674 28 86.2 32 ...........A.T...-A.......... ATCGCTCGGAACATCGTCGTGTTCTCCATGCG 1673614 29 93.1 32 C..........A................. CGCGCTCTGACCTGCGTAAACGCCCGACGGCG 1673553 29 100.0 32 ............................. GATCACCTCCAGCTCCCGGGCCTGGTCGGCCG 1673492 29 100.0 32 ............................. GTCTTGCTGTGGATGTAGTCCACGATCTCGTT 1673431 29 96.6 32 ..................A.......... AGGGACAGGCCCAGGCACTGACCACCATGGCC 1673370 29 100.0 32 ............................. GGGATCGAGTGCGCCGAGCACCGGGGCGCCGA 1673309 29 96.6 35 C............................ TGGCTCCGCTCTGGCGGCCTCGCCCCCCCCCGAAA 1673245 29 93.1 24 ...........A..T.............. CCGCTCGGCCGCGGACCGCCTGAA Deletion [1673193] 1673192 29 86.2 32 ...........A.AT........A..... TACGCGGTGAACTCCGAGGCCTGGCGGCATGA 1673131 29 96.6 32 ...........A................. CCGATACGGCACCAGCGGCTGGTGAGGCTGCC 1673070 29 96.6 31 ...........A................. CGCCGCAGACGTAGACGCACTCCTCGGGATC 1673009 29 93.1 32 ...........A........C........ CCGAGGGTGGTGCGCGCCCACCACAGGTTGGA 1672948 29 93.1 32 ...........A..T.............. CTGATCACCACGAACGTGGGCCGGAGCCGGAC 1672887 29 96.6 32 ...........A................. CCCTTCTTCGTCCGCTTGGCCGGGTCAACCTT 1672826 29 86.2 32 ...T.......A..G............T. GTGACGTCGATCAGCTCGCCGCATCCGGGACG 1672765 29 89.7 32 ......T...AA................. CGCCCGGCCTTACCGTCGTCGGGCCACTGGGG 1672704 29 100.0 31 ............................. CCGGGGACACCACGCCCTTCGGCCACACATC 1672644 29 96.6 32 ...........A................. GTTGCAGAGATCCGCGACCTGATCGAGCGTGT 1672583 29 96.6 32 ................T............ GGCCTGCTCGCCCTGCAGACGACGCCGATCAC 1672522 29 100.0 32 ............................. AAGGGCGCAGGCTCGGCCGGCGGCGGGTCCAC 1672461 29 100.0 32 ............................. TACCTGGGGTGGCAGCCCGATGGGACATTCGT 1672400 29 100.0 32 ............................. TCCTCCTCGGATCGGAGCGGTGCGTCGGGCAC 1672339 29 100.0 32 ............................. GCGATGGTGGAGGTGGGGACGCCGCCGGACGG 1672278 29 100.0 32 ............................. TTCAGCCCGGTGCAGCCGACCGAGCGTCAATT 1672217 29 96.6 32 ..........T.................. GGGCAGGAACACCTGATCCGGTGGAAGCTGCC 1672156 29 69.0 28 ........T.......G.TCA.C.GA..C GGCTGCACAACGTGCCGATTGAGTTCGA 1672099 29 96.6 32 ........T.................... CCACCGCCGCGAAGGTGAAGGCCCCGGACGGG 1672038 29 100.0 32 ............................. TACCCGGGCGAGATGGCCCGGGTCAAGATCAG 1671977 29 93.1 32 .............AG.............. GTATCCCCCGGAAACCTTGATGTCCCGCCAAG 1671916 29 86.2 32 C........A.A..T.............. TCGCCGGTGCGGTGTGAGTGGACTGCTAGGAC 1671855 29 82.8 32 C....G....TA..T.............. CGGCCACCCGGGGCCAAGGCGCGCGCACGTGC T [1671833] 1671793 29 89.7 32 C..........A..T.............. CTGGCCGAGGTGCTGTCGAAACGGACGCCGTG 1671732 29 96.6 32 A............................ GCCAGCGAGTGGGTCGAGGAGATCACCTACCA 1671671 29 100.0 31 ............................. GTCCGCCGGGCGGACGTCGAGGAGCGCACCC 1671611 29 86.2 32 .GT.CT....................... CCGGTAGACGGAAGCTCGTACGTCGGGGCGTC 1671550 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 48 29 94.0 32 GTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Left flank : ACCTGGTTATCCGGACAACGCAGCAACGAGATTGCCCGATTGAGGGTGGGCCTGCACCCGTTGCAGCACGACGGCACCCCCATCACCGGTGACTCCCAGCAGATCCTGGCCCGCGAGACCGTCTGTCTCCTCGACATCCCACCCCACAAGACCGGCACCGCCTTCACCAAACCAGTCGACCCGATCCTCTGCCAGGCCGTCGATGCCTGGCAGGCCGTCCGCCCGGATCAGCCGAAGTTCACCGACCGCCGCACCGGCGAGCGCGTCGACCTGCTGTTCACCCTCCGGGCCTGCCGCGTCCGCTGCGCGGAGGTCGTCCCGCGCCTGCGGGGTCCCCTGTCGGTCCTCCCCACCAGCACGGGGCCGCCGCGAACTCGTCAAACACCGACCATGCGCCGTGACACGATGAGAACCCGCACCTTGACACCACAACAGCACACCACGTCGCGCAACCAGTCAAGAAACAGCAAAGCCGCTGCTTGCGCCGCAGGTCAGAAAGC # Right flank : GGCATGACCGCTCGGCATCACGCCCGCCCCTCTTCCTCGGAGGCACAGGGATCATTCCCCGCCAGACTCCCGACCAGCTACGGTAGGAGCCGTGGGTGTCCGGTCGAACACACCACAGCCAGGCCGGAGGAGGCGAACCGTTGAGCGCGCAGCCGATCGCGTACGCGGACGTGAATCACGAGGCCGCGTTGAAATACGCCGTGCAGCTCATCGATCACCGGTGGGCTCAGGTCATCGAGGGGCGGATCGTCCTGGTGTCACCCACGTGGGACCACGAGAACGTGGCGGCGAAGATCCGCCGCCAGCTCGACCGCCGCGTCGATGAGCTCGGTTGCATCAGCGGGTCCGGAAACCTCGACCTGCCAGGCTCCCCCAACTGGTACATGCCTGACCTTGCGGTCATCCCCGAAGACCTGGCCAAAGGCGCGGGCGCTCTCACCCCCGACCAGACCCTCCTGGTCGTCGAGGTCACCTCCGAGTCCAATGGCGACACCGACCGT # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [28-40] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1677440-1676350 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPLE01000001.1 Streptomyces viridifaciens strain DSM 40239 map unlocalized plasmid unnamed scaffold1_size, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================= ================== 1677439 29 62.1 21 C.A.....A.TGAACA.C.....G..... GAGGTTCCGAGCTCCGAACCG Deletion [1677390] 1677389 29 79.3 32 C.A........GT.A......A....... TTCGGCCAGGCCGAGGACGACCGCGCTGTTAC 1677328 28 86.2 32 C.....G.......C......-....... CAATCTCCAGCACACCGACCCGTGGCCGGACG 1677268 29 89.7 32 C.....G.....................C AGCAGCGCCGCGAGGGGGCGCCCGTCCATGGC 1677207 29 93.1 32 T.............C.............. GCGGTTTCCGGCGGGGTTTCTTCCGCCTCCAG 1677146 29 89.7 32 ...........G..C.....A........ GTTCAGGCCGCGTTCCGTAACCTCGCCAACGC 1677085 29 89.7 32 ........T..G..C.............. TCGAGCGGGCCGGAGTCACCGTAGGCCGTGAT 1677024 29 93.1 81 ...T............G............ AGGCGGCGCCAGGTCTCGGGACCCGGGTAGCCGGCCTCCCCGCCCGTGCGGGGCGCGAACTGCGCGCGCTGAACGATGAGT 1676914 29 86.2 32 CCT...........C.............. ATCTCGGCACGGCTGAAGGGCCGGCACCCCAG 1676853 29 100.0 32 ............................. ACCGGCCGCAAGGTCGGCATCGGCATCCGGCT 1676792 29 96.6 32 ...........G................. TCGACCAGCCAGTAGCCGGCCCGGCGCTGGTC 1676731 28 82.8 20 C...........GGC......-....... ATGGAGGCCGGATCGGAGAG Deletion [1676684] 1676683 29 96.6 32 ..............C.............. ATGTGGGCCGACGACGTGCCGGTACAGATCGT 1676622 29 96.6 32 ...........G................. TTCGGCCAGTTCGAAGCCGCCGACCTCGGCAA 1676561 29 89.7 32 ..............C..A.....T..... CGGACGATGAGCCGGCCCAAGGACGGCAGCGC 1676500 29 100.0 32 ............................. CCGACCGTGTTCACCTCGAACTACCCGATCGA 1676439 29 93.1 32 C.............C.............. GAGTTGACCCGGCGCCCGCTTTGCAGACCGGC 1676378 29 89.7 0 .......T...G..C.............. | ========== ====== ====== ====== ============================= ================================================================================= ================== 18 29 89.7 34 GTCCTCCCCGCACCTGCGGGGGTCAGCCG # Left flank : GCCCTACCTCCTCGACGGCTCCCCCACCGACATCGACCGCCTCAAGAGCGGCTCAGCAGAGGGACAGGGCGACGACGGCAGCGCGGGGCTCGCCGCCCGCTCGCGCCTCGGCGAACCGACCACCGACGTCATCGTCCTGTTCCGCCAGCAGGCCGCCGGCGCGGGCCGCCCCCGCCTCTACTACAGCTACGACCAGGGCGGCCTGCACGAAGTGGACTCCAGGTACTACCGGGCCCGCGACGACTCCGTCCGCAACGCCCGCCGCGCCCAGGAGCGGGACCGGCTGCTCAACACCGTGCCGATCCCGCACAGCTGGTTCCGACACCTGCCGCCCGTCGAGAGGTGGTACACCCCCAGTGGCGTCCGCATCAACCGACGGCACGTCATCGTCTTCGCTCCGGACGGTGCCTGCCTCAGTGGACCCGTCGGACGGCTGCGCTACAGCCCGACCCGAGGGGTGCACCCCATCCACCGGCCCTGAGGCGATACGCTGCCCCCTC # Right flank : ACGCACTGACAGCGGCCAGTTCAAATTCCCCACGTACGGCCAGTTCCGGGATCACGGACGGTAGCCAGTGAGGGTACGTAGATTGCGCCCCACAGGGTGGACGTCGTCCCTGCGCCCGTGCTGCGTGGGGCGTGGTGTCCGGTTCATCTCGCCAACGCTGGGCCCGCCCACGCGATGCCGTCCACCGCCACCCTGGGTCGCCGCCAGCAGCCCTGGAGTCGTTCCGGTGAACGCGGCAATCTCCCGGTGGTTCGGAGTGGCTACGTAACCGCACTCCATCGCGGCCCGCAACGCGCGTCTTCCTCACCGGGAACCAAGGCGTACTGCGTCACCGCACCTGCCTACCGCCATGGACTTGTCGAATATCGATATGCTCCTTTAGCCTTGGGCATATCGAAAATCGATAGGGAGGATGCGATGAACTCGCGACTCACGAGGACCCTGGCCTCGGTGACCTTTGCGCTGGCGGTGCTCTGCGGGCTCGCATTCGTCGGCACGGG # Questionable array : NO Score: 4.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:-0.29, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCTGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //