Array 1 9432-10427 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQNR01000007.1 Corynebacterium bovis strain 16-1683 - SMALL 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 9432 29 100.0 32 ............................. ATCTGGGACATCGCCGCCCGCAGATCATTCGT 9493 29 100.0 32 ............................. ATGGTCGGCCAGGTGTGCGGTCTTCTGCATAG 9554 29 96.6 32 ............C................ GCGGCGGGGGCGATTGGAGCGAGGTAGTGGGA 9615 29 93.1 32 ............C...............T CGAGGGCAGCGTTCGAGTCGATGTCGCCCCTG 9676 29 100.0 32 ............................. CGACTCCGGCCACGCCACACGAGCACTGTCGA 9737 29 96.6 32 ............................T CGGCACCGACGCCTGTGACAGCTGGAGAGCGT 9798 29 96.6 32 .....T....................... GAGGCGTGCTTCGTGTCGTTCAGGGCGGCGGG 9859 29 96.6 34 ............................T CACCCGCGGAGTCACGTTCCTCCCCCCCCACTGG 9922 29 100.0 32 ............................. TCGGCGAGCTGCTGTGCACGGTCGGTGGGGGA 9983 29 93.1 32 .C..........................G TTCCCGTCGCCGCCGTAGCCAGTGGTGAACAG 10044 29 89.7 33 A......G....................T CGACGAGAAGACATGGTACGGACACCCCATACC 10106 29 100.0 32 ............................. CCGTCACCCCAGCACGCCAACAGCACCGCCGC 10167 29 93.1 32 ................T...........G CCCCAGAACTCCCACTCGTTGTGGGTGAACGC 10228 28 79.3 82 ...........CC.G.......C..-..T GTGGGGAGCACCCGCGGGGATGACCCCGGGCCGCGCCGCTCCTGGCTGGAAGGGAGGACGACCCGCTAGACTGCAGACACTG 10338 29 93.1 32 ............C...............G CGTCACGCTTGGACGACTTTGATCCGGCATGT 10399 28 93.1 0 ...........-................A | C [10414] ========== ====== ====== ====== ============================= ================================================================================== ================== 16 29 95.1 36 GTGCTCCCCGCGTGAGCGGGGATGATCCC # Left flank : GCACCCGAGGACGGGGCCGACCAGGTTCCCGGCGGCCCTTCGCGACGGGAGTCCCCGTGATCACCGTGGTGTTGACGTCTCCTCCGGAACGGGTGCGTGGTCACCTCACGCGCTGGCTCTCAGAAGTGGCGACAGGAGTGTATGTCGGCTAGGTGAGTGCCCGCGTGCGGGATGAGTTGTGGCAGATGATCCAGGTGAACATGGACGGCGGTCGGGCGGTGATGACATACCCGACCACCACCTGTGAGCAGGGGTATGCCGTGAAGGTTCACAAACCGCAGTGGGAACCGGTTGATGTCGAGGGGCTGGTCCTGTTTCGTCGGCCGGGCGGTGACCGGACATCGCGGACCCGCGGCGAGTGGTCACGGGCCTCGCGGGAGCGTGGAGGCAGGACCAGGCGAGCGGATGGCCCGCACTGATGGCAGGTACAGACGTGAAAGGGCTGATCGACATCGAATGAAATCTGGCTTCTCGTGTACTACCATCCCTGGTCAGGAAGT # Right flank : ACCCCCCCACCACCACCGCCCACCCACCTCCCGTCGTGTTCGCCCGTCCGCCGACCGCAGGTCTAAGGTGAATCCGTGGCCACGCGAACGACGACGAACAATGCCGCGCCCGGGTCAACCCGGCGCCGGCGGGGCTGGCGAGCGTTCCTCACGCCGGGCTGGGTCATCACCGCCGTCATCGTGGTGATGTTCGCCTACGTGGCGTTCACCGTCCTCGCACCGTGGCAGCTGGGGAAGAACACCCGCACGCAGGAGAACAACCAGCGTCTCTCCGCCGCGATGGACGCCGACCCGGTGCCGGTCGAGGACGTCCTCCCCGCGGACGGCTCACCCGCCGGCGCGGACCGCGAGTGGACCCGCGTGACCCTCCAGGGTCGCTTCATCCCGGACGCCCAGGTGCTCCTGCGCAACCGCCCGGTGGACACGAGCCCCGCGTTCCAGGTCCTCACCGCGTTCCGCCTGGACTCGGGCGGCACGGTCCTCGTCAACCGGGGCTGGAC # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //