Array 1 1158-1426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMV010000025.1 Vibrio metschnikovii strain M19.1W Scaffold25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1158 28 100.0 32 ............................ AGACATGAGCAATTTTTCAATGGTCTTGGGTG 1218 28 100.0 32 ............................ ACAAGTGGAGTTTACTTGCGGCGAGCGCCAGA 1278 28 100.0 32 ............................ AAACATGCTACACCGTCCTTAATTCAAGTTGT 1338 28 100.0 32 ............................ GGACACAAAAGCGGTACGTTCAGCATTTACCA 1398 28 96.4 0 .............T.............. | A [1421] ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCTAATATTAATATAAATCAATATCCTAAATTCATTCGGCAGCTAAAAGGTAAGCGAGTTATCCAAGATGTTGATGGCTCAACCAGCTGGATCGATTTAATTCAATCAGAGCAAGTCGCTAATTGGTCCATTCAGACAATGAAAGATATGATTAATCTCTTCATAGAAAGTCTTCCTGAAGGTGAGTATAGAGATTGCTTTATTAAGTATTACCAATAATGTAACAATTCAGCTAACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTACTATGCGTTGGTTTTGGTGATTACGGTGTTATGCGGTAAGTTTGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCATTGATTTTATTAGTTTTTAGTGTAATGCAGTTAGTTGGTAGTCGCGTTGCTCACCCCTTAACGCGGCGTTAGGCTCAAAGAGGTTAATATGACATCAACAGTTGGTCTTAAAGCAGTGGCAGTTTTAGAGGGGAGTAAAGGTTTACTCTCTCTTATCGTTGCTATTGGTTTGCATTTCCTTGTTGGTGATAACTTGCAAGAATTAGCTGAATCGATAGTAAAACATGCTCATTTAAATCCAGCGAGTCATTTGCCGAATATTTTTATAACAGCAATCAGTGATATTTCAAATATTAATATAAGTATCATTGCGTTAGGTGCATTAGCGTACTCATTAATTCGTTTTGTCGAAGCGTATGGTTTATGGAAATCATATGGCTGGACAAAATGGTTTGCTTTGTTGAGTGGAGCAGTTTAT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6085-5876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMV010000027.1 Vibrio metschnikovii strain M19.1W Scaffold27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6084 28 100.0 32 ............................ AAAAAAGACGGGTTCTCAGCGATAGGGGTAAA 6024 28 100.0 32 ............................ TTTGGCCTTCTGAGTGCTAAGGGGGGCGGCTT 5964 28 100.0 32 ............................ TTGATTTCTGCTGCTTTTCAGGGATAGCATCA 5904 28 100.0 0 ............................ | A [5880] ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGAGAACCTGATTTATTTCTTTACAAAGAAGATGGCTCAGTCCTTTTTGTAGAAGTAAAAAAGGGGTCCGATCGTCTTTCACAGTCACAGCTTGTATGTCTTTCACAAATTAAGTCGATTTTGGGCTGTGATGTTGCGGTTGTTTATCTAACGGAGGAGAATCAAGTATATGAACCTAAAACTTATATGCTTGATGTTATAGAGTTTCCAGCTTCATGGATAGAACGCAACTAACAAGGCGTTAAAGAGGGATTCGCAACGCGCGGCATTTTCGTTATGCATTGATTTTATTGGTTTTTAGTGCAATGCGGTAAGGTTAGTTGTTGTGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTACTAATAAATCGAGTGGGAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATGAGTTACTGATAAAGTTTCATA # Right flank : TTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCTTTGATTTTATTAGTTTTTAGTGTAATGCAGTTAGTTGGTAGTCGCGTTGCTCACCCCTTAACGCGGCGTTAGCTTCTTAAAGGCTAGAATCATCAAAATATAAGCCCATTTGTTGTGAAAATTCAGCTTTTAGCGTTCAAGTTGCACAATTTAGCTTTTGAGTTTTGCCTGATGTTGATTTGGTAGAACGTATTGAAATTTCAGCAGTTTCAAAGCCGCCGTAAGCTAACAAACCTCGATGCTTCCATTTTGTTGGATGCTCCACACGGAAAGTTTGGTTTCACAAAGGCTGCATCATCGCTGAAAGTGTGCTTTCTTTGTCGCGGACTCCTAACCGTGGCCAACTTAACCTTGATCGTTTTGAGTTTTGGCAGCCAACATCACAGCTTTTGGCGTTGGACGTGTGTTTGCGTGATGCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 821-432 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMV010000072.1 Vibrio metschnikovii strain M19.1W Scaffold72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 820 28 100.0 32 ............................ ATCCTGACCGCGCCCTAAAAATAATTTCTTCA 760 28 100.0 33 ............................ CACGTTAAGAATGGGTAACACAGCGCGCAAAGG 699 28 100.0 32 ............................ TGAACTCAAAATAATTATAGAACCGGATAAAA 639 28 100.0 32 ............................ ATACAACCCCCATAAAAAATAACCAGCCGAAA 579 28 100.0 32 ............................ AAACGCTGAGCTAATCGGATTATGTCAAAATT 519 28 100.0 32 ............................ GAACAAATGGACGTTCGCAGCTAAGTAAAAAT 459 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAGAGGGACAGCCAACGCGTGGCATTTTTGCTATGCGTTGGTTTTGGTGATTACGGTGTTATGCGGTAAGTTGGTAGTAGCGTTGTCTGCCCCTTAAGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAATTTTAAGTCATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAAGTTACTGATAGAGTTTCAT # Right flank : AATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCGTTGATTTTATTGGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTATGCTTTATTGAACCTCAGCAAAATCAATATATAAATTTTAATGGGAAAACTCAGTCTAATTTAGAAGTTTTCCTATTCTAATTTATTGATATTATGCGTTTATTGTTCTTTTTCGTGGCTATTGAAAGTTGAACGATACTCGTGCTTTTTTAGCCAACTCTGCTCTGACATATTGTGTGCGTAAAAAGTTCGATTGATGTTGAAAGGTCTCTTTCTTTGGTGTTGCTTGCTCATTGATCCCACAGGCTATTTCGCTTCAGCATATTTGGGATCTCATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 173350-172834 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMV010000002.1 Vibrio metschnikovii strain M19.1W Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 173349 28 100.0 33 ............................ CTTTACGACCTGATTTAATCGCTGGAATAATGT 173288 28 100.0 33 ............................ CTGACTTGATGGCCATCGGCTTATCGAAAGAGC 173227 28 96.4 33 ..............T............. CATCACAAGCCGCACGTTTACGACCTTTTAACG 173166 28 100.0 33 ............................ TATAGTAGTGAACATAAATGCAGCGCGTATAAA 173105 28 96.4 33 ...........T................ CTAGGAGGCGTTGACGCCAGTGTAAACACCGTA 173044 28 100.0 33 ............................ CATCATCATTCAAAAAATATTCATCACCCTGAC 172983 28 100.0 33 ............................ TGCAGTAGCTTGTGTCGCTGCTGGCAAAAGCTG 172922 28 100.0 33 ............................ TCCGGTGTTTACCAAGTCAACTACGACAACACT 172861 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : GCTGTTGTCATCGATCTGTTTGCACGAAAACCGGTTGGTTGGGCAATGTCGCTATCACCAGACAGCAAGCTAACTGGAAAAGCATTAACGATGGCTTTTGAATCTAGGGGAAGGCCCAAAGGGATCATGTTCCACAGTGATCAGGGTAGCCATTATACCAGTCGCTATTATCGTCAGTTGCTATGGCGTTGTCAGATTAAACAAAGCTTATCGAGGCGAGGCAATTGCTGGGATAATGCGCCGATGGAACGCTTCTTTAGAAGCCTGAAAACAGAATGGGTTCCAACGGCAGGTTATCGTAGTTTTGCAGAGGCTCAACAAGAGATCATCCGATACATTATTGGATATTACAGCCAGCTCAGGCCACATCAGTATAACGGTGGGTTAACGCCCAATGAATCTGAACGCTTGTACTGGGAAAACTCTAAAACCGTGGCCAATTTTAGTTGACCACTACAGGGTGTTTCTTCGAAACCCCCACGCCCTAGCAAGCTTAATGG # Right flank : CTTTCTTCGGCGTTCCTACTTACTTTTATCGCTGTCTTCTGTCACCGATTATGCAAAACTGATCCACTTAATACTCTCAGTCCGCATGGATTCCCGCCTGCGCGGGGATGACGGTTTGGCTATTGTATGGGTGGTCAATTCGATACTCATCTTGCCAGGCTGTGCCTGTCATAGCTCTTCGTTAATCGGGGCAATACAATATTTTGCGCAGATTCGACAAGAAAATGTGAGTAAAGTAACAATATGAGTCTTTCATTCATTAGACACTATTAACCATAAACTTTGTGATTGGTTGAATCTATGAAAACGTTAACTTTACCTTGTCAGCGAGACGTTGAAATAAACGCCGCAGAGCTAAACGTCACCCTTAAAGGTCATGAGCTGCATTTTTCTTATCAAGGTGACCCATCAAAACCGATCAATGATCGTTTTATTCTTGCTCGTAGTTTACTCGAAATGGATGCTAATGCGCTTGTTGTTGGCGATGGCTTTCAAATGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 174920-174648 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMV010000002.1 Vibrio metschnikovii strain M19.1W Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 174919 28 100.0 33 ............................ CATTCAAGCAAGTTATTGATGATTGTGGCACAA 174858 28 100.0 33 ............................ TCTCGCTTTATCAACAAGGATGCTAACTCAAGC 174797 28 100.0 33 ............................ CACGATTGCAGCTAACAGGCTGAAAGATAACCT 174736 28 100.0 33 ............................ TCTGCCCATTCATAATTACGCACCTTTTGGTGA 174675 28 89.3 0 .........................AGT | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.9 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : ATCGTTGGATGTATTTGGCTGTTGTCATCGATCTGTTTGCACGAAAACCGGTTGGTTGGGCAATGTCGCTATCACCAGACAGCAAGCTAACTGGAAAAGCATTAACGATGGCTTTTGAATCTAGGGGAAGGCCCAAAGGGATCATGTTCCACAGTGATCAGGGTAGCCATTATACCAGTCGCTATTATCGTCAGTTGCTATGGCGTTGTCAGATTAAACAAAGCTTATCGAGGCGAGGCAATTGCTGGGATAATGCGCCGATGGAACGCTTCTTTAGAAGCCTGAAAACAGAATGGGTTCCAACGGCAGGTTATCGTAGTTTTGCAGAGGCTCAACAAGAGATCATCCGATACATTATTGGATATTACAGCCAGCTCAGGCCACATCAGTATAACGGTGGGTTAACGCCCAATGAATCTGAACGCTTGTACTGGGAAAACTCTAAAACCGTGGCCAATTTTAGTTGACCACTACAAAGGAAACTTACTGGCTACGGCTAG # Right flank : GGTACAGTAAATTTGGCCACCTAAATAGAGGTGTTAAAATGCATCTCAGAGACAAATAGGTGACTTTATGACAAATCGCACAAGACGAATTTTTAGTGCAGAGTTCAAACTTGAAGCAGCACAATTGGTAACAGAGCACGGCTATTCGGTTATCGAAGCCGCCAAAGCAATGAATGTCAGTAAATCAGCAATGGATCGCTGGGTACGACAGCTTAAGCAAGAGCAACGAGGTATACCACAGAAGGCTTCTCCGCTTACGCCTGAACAAATAGAAATTCGTGAACTCAAGAAGAGAATCGCCAACCTTGAGGAGCACAATGATATTTTAAAAAAGGCTACCGCTCTCTTGATGTCGGACTCACTGAACAATTCTCGATAATTGAGAAACTCAGGAAGAGCTTTAGCGTAAAAACCTTATGCAAGGTATTCAGTGTTCATCGTAGTAGCTACAAGTATTGGCGTAACAGAGACAAGCGAATATCGCCTGAGCAGATAGAATT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 177161-176218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMV010000002.1 Vibrio metschnikovii strain M19.1W Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 177160 28 100.0 33 ............................ TAAGCCTTGGAAGCAAATTACCCAAATTGGTTA 177099 28 100.0 33 ............................ TAGTGAAGGTTTCTTGGTTGCGTTTCCGAACGA 177038 28 100.0 33 ............................ TGTTATATTACTTTCCTCTTGCCACTCTTGCTC 176977 28 100.0 33 ............................ TCTTTTTAATGTCATCATTCCAGCTCATGCGGT 176916 28 100.0 33 ............................ TGATGAGTTGATTCACGCCTTTGCAGAGTCTGG 176855 28 100.0 33 ............................ CAGGTCAGGCTTGCTTTAGCTGAGCATACTGTT 176794 28 100.0 33 ............................ TATGGATGGGACGTGATTTTCATCGTTCAAGAT 176733 28 100.0 33 ............................ CTTTACAATCGCAACTAAGCAGATTTCACTAAA 176672 28 100.0 33 ............................ TAAAGCCTCTTATTGTTCAAAGTCCCGCGATAG 176611 28 100.0 33 ............................ TAAAACCGCTGGATTTACTCGCTTTGCTGACGA 176550 28 100.0 33 ............................ CAGTAAGATAAACGAGATTTTCAGATGAGAGAA 176489 28 100.0 33 ............................ CGTCACCAAAAAAGATAACGCCTTTGATTTAGC 176428 28 100.0 33 ............................ AATGGAAGTCGGCCACGGCTATTACTCGCTAGA 176367 28 100.0 33 ............................ TGCCATGTATAGCAGAAGCTTGAGCAGGTATAG 176306 28 100.0 33 ............................ CCGACAACGCAACCAGAACCTGAGTGCTCAAGG 176245 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCGCTTACCCGAGATATGGCCGGTCACTATGACAAACATAAGGTTTCTGATGCGTTTCGAAAACGCGTTATCAGCATGAATCTGTTACAGCAAGTCTCCTCGGATATTAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTGCCCCCAGCAGTTAGAGGGCGTATGAAGCTATGGTTTGTTGAACCAAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCAGTTGCACTGACGGTCGTTGACTATTTAATGCAGCATTGCCCTGTGGAATCTGGCTTAATGTTATTTCGCAGTATTCCAGAACCACCCGGTTATGAGATTCGCTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGATTTCTGGATTACAATTGATAGTCGAAACCCTTATTTCGTCAAAATAGCAATATATGGGTTTATTTTTGCGATCTTTAACAATATATTGGT # Right flank : TATGGGACAAGTGTAGTGGTACAGTAAATTTGGCCACCTAAATAGAGGTGTTAAAATGCATCTCAGAGACAAATAGGTGACTTTATGACAAATCGCACAAGACGAATTTTTAGTGCAGAGTTCAAACTTGAAGCAGCACAATTGGTAACAGAGCACGGCTATTCGGTTATCGAAGCCGCCAAAGCAATGAATGTCAGTAAATCAGCAATGGATCGCTGGGTACGACAGCTTAAGCAAGAGCAACGAGGTATACCACAGAAGGCTTCTCCGCTTACGCCTGAACAAATAGAAATTCGTGAACTCAAGAAGAGAATCGCCAACCTTGAGGAGCACAATGATATTTTAAAAAAGGCTACCGCTCTCTTGATGTCGGACTCACTGAACAATTCTCGATAATTGAGAAACTCAGGAAGAGCTTTAGCGTAAAAACCTTATGCAAGGTATTCAGTGTTCATCGTAGTAGCTACAAGTATTGGCGTAACAGAGACAAGCGAATATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 468-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMV010000092.1 Vibrio metschnikovii strain M19.1W Scaffold92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 467 28 100.0 32 ............................ TTTTTAGGAATCCCCATCGCATCTAAATAACG 407 28 100.0 32 ............................ TTCTTCGATTCGCGTTGTGTGAAATGTTTTAG 347 28 100.0 32 ............................ TCTCTTCACCGCCTCTGTATGCCTCTAAATCA 287 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAATTTTAAGTCATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAAGTTACTGATAGAGTTTCAT # Right flank : AATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGCAATGCGGTGAGTTGGCAGTTGCGTTGCTCACCCCTTAACGCGGCGTTAGGCTAATAATCAAAAATTGAGGTTTCATTATAGTGAATTGGGTTTCTGAGCTATTTAAAAATATTACAGTTTCAAAAACACTTACAAGTGCTTGCTGCCTTACTGG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //