Array 1 264347-263259 **** Predicted by CRISPRDetect 2.4 *** >NC_022795.1 Pseudothermotoga hypogea DSM 11164 = NBRC 106472, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 264346 30 100.0 45 .............................. GCAACATGCAATTTAGATCGTAGTTCTTTTTTCTTGCAAGTTCTT 264271 30 100.0 46 .............................. AACATGCTATTCGCCTCCTTTCACCAACACACTCTGTCAAATTCCC 264195 30 100.0 40 .............................. ATCCAATCCTGAATCTCTCGTACTCTCATCATACCTCCGC 264125 30 100.0 37 .............................. ATCAGTATGAACTATGTTTTCAACCGTGCATTTAAAA 264058 30 100.0 44 .............................. AAGTTCATGCCGAGTTTGGCGAACAACATGGCGATTTCAAACGC 263984 30 100.0 36 .............................. TCATGGCACAAAACAACGTCATAATAGGACTCGGGA 263918 30 100.0 38 .............................. TGAAGAAATACCCAAAGAACCGCGTTCGCTGTGAAAAT 263850 30 100.0 38 .............................. CAGTCTTTCAATCTCCTTAAGTAACTGCGCCTTCTCGT 263782 30 100.0 42 .............................. CCTTCTTCACTATCCCATAGTACACGCCATAAGGAAAAAGGA 263710 30 100.0 38 .............................. CAGTCTTTCAATCTCCTTAAGTAACTGCGCCTTCTCGT 263642 30 100.0 36 .............................. TGAGCGTTTCCGCTCACGCCTTTAGATCTTCAAGAT 263576 30 100.0 46 .............................. AACATGCTATTCGCCTCCTTTCACCAACACACTCTGTCAAATTCCC 263500 30 100.0 40 .............................. TCGGGATCAAGACACTTTGAGCTCACGAAACAATTTAAGA 263430 30 100.0 38 .............................. TTCCAGTGCTTCTTCTCTTTGCTATTGCAGGAACCAAA 263362 30 100.0 45 .............................. TGCCGTCAAGATTGTAATGGCTTCTGTTTCTTTGAATCGGGCCGG 263287 29 76.7 0 ....G......-.T...A.T..C......T | ========== ====== ====== ====== ============================== ============================================== ================== 16 30 98.5 41 GTTTAGAAGGCTCCTATGAGGGATGGAAAC # Left flank : ATTTTCGATCAGAAAAGGTTGAAAGCACTGTCATTGGCACTCCAATCGAGAAATTCTTCTCTGTTGATACACGGATTCGATTTTCCGAACGAAAAACAGGTGGAATACATCAAAGAATGCGCCAGAAAACTCCTTAAAGATCTCGAGATCAGGGCAGAACTTCGCTTGGATCCAAGCATCGACATGTGCTTCGAGAAAGCAGGGCTCGACCTTTTTAAATGGTGATTGCTATTTCTTGATCACTGTTACTAAAACTTTTCAGTGGTCTTTGACAATTAAATCTGATGTTTACCCATTTCCAAAAGCTTCATCTGAAGCCTATTCTAAAAACAGGTATTGTAACGTTCATATGAACCACCCACTTGTGCCTCAAAAAATGAGAGACTCAGTAGAAGTGCCATTTTCGAAAAGCTTCAACAGAAGGGCACTTCCAAAAAGGTCGAATGTAACATCGTCTCGACTCAAAAAGTGCCGTCTTAATAATAAAGCCACTTCCACGG # Right flank : GGACGTCCGTGTCGGAACTAATCCACACGTTCTGGTAAGTCAAGCCACGGTGAAGCAAAATGCTCGATCTCTTTTAGGGTATTAAGAAAAGATCAATTCTCTATCCAAGCCCCAACGATGTGCGCACCATGGAACGCTTTGAATGATCGATGATAATGTATGCCATATGGTCTGGTTGTTTTAGAATAAAATTGGGAGCTAAGGAATGAAGAAGATCTTCTTTTCGTTTGTTGCGCTGTTGCTGTTGCTGATGCTTTTTTCCTGCGATCCGAAGATCGCGGAGGAGGGAAAGAAACATCTCGATGTGACATCGTACCGTTTCGAGCAACTGGACGGTCTGAAGATCGCCTACCGAGAGTTTTCGGATCCATCGAAACCCACATTGGTGTTGATACATGGCTTTATGGGCAACACGACGAATTTCGAAAAGTTGTTTCCACACCTTGCTGAAAACTTTCATCTGCTGGTTGTCGATCTTCCCGGTTTTGGTCTGAGCGACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAAGGCTCCTATGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 279552-278738 **** Predicted by CRISPRDetect 2.4 *** >NC_022795.1 Pseudothermotoga hypogea DSM 11164 = NBRC 106472, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 279551 30 100.0 38 .............................. GAGTGTTTGAACGGCGTTTTCGACACGCACAACTGGCA 279483 30 100.0 44 .............................. CAGATTTGCAGAGTCGAACACATAGTCTTTTGAAATAATCGAAG 279409 30 100.0 46 .............................. ATCTCGGTGTTGAAAAACATAGCTATCAGCCAGCTGAAATATTCCT 279333 30 100.0 34 .............................. TCTATCGGGTCAATGAAATACGCCAATGGTACCA 279269 30 100.0 38 .............................. AAACGGGTGAGCGTTTCGCTCACCCGTCCATACTCCAT 279201 30 100.0 44 .............................. AAAGCTCGTCTATCTTATCCCACTTCGATTCTCTTCCAGCCACA 279127 30 100.0 42 .............................. GTTCAGTTTCAACGTCGAGCAAGTGCCAGCCGAAAAAGCGGC 279055 30 100.0 42 .............................. ACCTTCTGTGCCTCCTTTGTCTAATACGCATACAATGTTACG 278983 30 100.0 42 .............................. GTTCAGTTTCAACGTCGAGCAAGTGCCAGCCGAAAAAGCGGC 278911 30 100.0 42 .............................. ACCTTCTGTGCCTCCTTTGTCTAATACGCATACAATGTTACG 278839 30 100.0 42 .............................. TTATTTTCTGCGGGTCTGTTGTATGAGCCATTGCCGTTGCCG 278767 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 12 30 100.0 41 GTTTAGAGAGGTCCTATGAGGGATGGAAAC # Left flank : GAGGAGATACACGAGAAAATCGTTCTATTCGAGATGATAGTCTTGTCAATCACCAAAGCGGACAAGATCACTCAAAAGATTTTCGATAGGACAAGGCTGGGGAACTTAGCACCCGTGCCAGTCAAAAAGCTCTTCTGTCTTGATACATGGATTCAGTCCCCGAAAAGAGGGATAAAATACATTTGAGAAGAGTGCAGAGAAATAGCAGGGATGTCAAAATGTTGTGACGTCTTAATGATCGTTATTACCTTTATTTTAACTTGATCTTTGACAACTAAATCTGTGATTTACCAAATTCTGAACAGTTCTTTTAGAGCCTGCTTTAGAATATGTGATTGTAACTTTCGTGTGAACTCATCCTTTTCCTGTCTCACAGAGGGGGGATCCCCAAAACATGCCTTTTCGAAAGTTCTCATTACAAGGGTCCTTCTCGAAACGTCCAATGTAACATCGTCCTTTGCAACAAACTGCTTTGTCAGTAATAGAGCCACTTCTACGGG # Right flank : GAGCACACAGAAAGTTTCCTTCCGAAGATTCGGAAAAAGTTCAGAGAAGTCCTATGGGGACCCAACTGCATCGGTCCGAATGGAGATCTTTCCTGAAATGGATGGGACGTGGAAGGTGCCTCCGAGTTCAAACCGCGAATCTCTTCGACCTGAATGAAGTTTTTCTCGAGAGAATGAAAACTGATGATAGGGGCGGAAGTTGTCCAAATCGGATCCTTCCCTGAGGGATCGAGACCCGCCGGTCGGATCGAAGATCGTCGTCTCGCGGACAGAGGCTTTGAACGTTCTGTTTTCTGTGATGAGACTTCGATGCGAGAATTTGCAAAGAAGTGTTATAATTCTATTGAAGTACTGGGATGTGGGGGGACGTGATGGATAACTACCATCATTCTTTTTTTCTCGCGACTGATCCGTACGAGTACCTTCGATTCGTAAGAAGGAGGGTTTTGTCAAGAGAAAAGCTTTTGAAGGACTTCGAGCTCCTTCCCAAGGACCAGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAGAGGTCCTATGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 345856-340779 **** Predicted by CRISPRDetect 2.4 *** >NC_022795.1 Pseudothermotoga hypogea DSM 11164 = NBRC 106472, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 345855 29 100.0 36 ............................. ATCCACGTCTCGGTTGCTGTGTCTACAACTTTCTTA 345790 29 100.0 38 ............................. TAAGGAGAAAGGTTCAGAGCTAATCGGCTATCTAAACG 345723 29 100.0 36 ............................. AAAAATCAACCACTCCGCTTCTTATTGCCGAAAAGA 345658 29 100.0 37 ............................. AGCTCTCTCTTGTACGCAACCGCTACCGGCTCGTTTC 345592 29 100.0 36 ............................. TCTCTTGTGTAGATTTCCTTCGCATTCAAAAATGTT 345527 29 100.0 37 ............................. AAGCATATTACACAGTTCCGTATCTCCGCTGTATGCC 345461 29 100.0 36 ............................. ATCTTGAAACTCCTCATACTTTCTCCCCCTCTCTAA 345396 29 100.0 36 ............................. TTTCCGTTCAGCCACCTGTACAGTTCCTTAAACCCG 345331 29 100.0 37 ............................. CACCCGAGAAAATACAAGCAAATATCGAGCAGATTAA 345265 29 100.0 36 ............................. CAGCAACGTATGTGTTAATGAGTTCGCCGACGCTTG 345200 29 100.0 36 ............................. TCGCGGATACGTTGTTCGTGTTCAGCCAAATAACAC 345135 29 100.0 36 ............................. AATAGTTATCCCGTGGAAAGTATGCACTATGCACTA 345070 29 100.0 36 ............................. ATTGCTCCTGCCGGAGACTTCGCTTCCGGATCCCAA 345005 29 100.0 36 ............................. AAAATAAACTCAAAGCAACATGGCAGGAAGTGAAGG 344940 29 100.0 37 ............................. CGGGCGAGGACACGTGGATTACACCGCCGCGGATAAG 344874 29 100.0 36 ............................. GGAGCTAAAACTCCACCAACCCACTTGGCAGTTCCG 344809 29 100.0 37 ............................. TTCCAGAATCGGTACCGTCTACGGCTGGGAATATACG 344743 29 100.0 36 ............................. TGCCATTCCTTCTCATGCTACACAGATCCTTGAAAT 344678 29 100.0 37 ............................. AACAAAAGAAAAGCCCGCTTTGATGCGGGCTTTGAAA 344612 29 100.0 37 ............................. TTGTTCCTGTGCAGTAAAGATGCCTATTTTTACGAGA 344546 29 100.0 36 ............................. TTGAGATGATTGCGAAAACATCTTCAAGCAACGGAA 344481 29 100.0 36 ............................. CAGTTGAAAAGCTCGAGTCCACTCTCTATGGTGATC 344416 29 100.0 36 ............................. ACTGCGCTGGAGAACGGGTTCCTTAGCTGTTGTCCA 344351 29 100.0 37 ............................. CGATTTAGACGTGTTCGTGGAACGTGGTGGGGGAGAC 344285 29 100.0 36 ............................. TGCCATTCCTTCTCATGCTACACAGATCCTTGAAAT 344220 29 100.0 36 ............................. TCGGACTAACGCGCGTGCTCGAACAGTTTGCTAAAA 344155 29 100.0 37 ............................. TAATGCTACACAGATCCTTGAAATAGACCCAAATACG 344089 29 100.0 37 ............................. AAGGCCTAACGATCACTCCCGACGACGGAACTGCGGG 344023 29 100.0 37 ............................. AGGACTTTCCTTTGCTTCAGGACGTGTTCGCGATCAT 343957 29 100.0 37 ............................. TCCAACGTTTCTAAAGAGACTTTCATGTTCCCCCTCC 343891 29 100.0 37 ............................. GAGTTGACACAGAGGAATATAAGAAGCAGCTTGAATA 343825 29 100.0 35 ............................. GGAAACATCTCGCTATCTAACTATTCCGCGAACAC 343761 29 100.0 37 ............................. AGTTGAATAGAATCTCCCACGTAGATATCGGAGACGT 343695 29 100.0 36 ............................. CGCACCGTGTGAGGATGTTGATTTTGTGTCGTTTCA 343630 29 100.0 36 ............................. TGTGGTGGTGGAAAAAGAGAACCAGAAGCTGAATAT 343565 29 100.0 37 ............................. ATTCTTCGCCAGGAAAGTCCTTTTTCTCTTAATTGAA 343499 29 100.0 37 ............................. AGCTTACGAAATCACATTCCAGTTCGTTGCTCAAGAT 343433 29 100.0 36 ............................. TCGGTAGTTGGCTCCTGTCGACAAGCTTCATTCTTG 343368 29 100.0 36 ............................. TTCCTGAGGAAGACGCTCTCAGGGCCATAGATATTT 343303 29 100.0 36 ............................. TTATGATATTCCGATTGAGCTTTGTAAGCGGTTTGA 343238 29 100.0 36 ............................. TTTCGCAAGCGACAAGTTTTGAAGAGCTGGAGCAAA 343173 29 100.0 36 ............................. GCGTACGCGAGCGAATGCGCATCGGAAGCGGAGCGA 343108 29 100.0 38 ............................. CGGAATTCGACGGTGTTCATCATTTTGTACATATCTCG 343041 29 100.0 35 ............................. AAGGTAGCAATGTTGACGAGCTTGAAAGAGAGGAA 342977 29 100.0 37 ............................. CGAGGACGTTTATCTTGTGCTTTGCAGGATCGTATTC 342911 29 100.0 36 ............................. CATATCTAACGAACCGAGCGAAGGCGAATTTCTCAT 342846 29 100.0 38 ............................. TGGATACCACATCTCCAGCTCATTCAAAAACTCTTCAA 342779 29 100.0 38 ............................. TAGTTTTGTTTTGGCATGCCTATCCCTCCGTCCAAATA 342712 29 100.0 37 ............................. CGTTCACAAAGCCTTCATTGTGCTTTTGCTCGTACTC 342646 29 100.0 37 ............................. TCGGATCAGTTGACCTCGTATCTCAAAACGCTATCGG 342580 29 100.0 36 ............................. TTGTATCCGTTGTTGCCCGAACGTGTGCCGGTTCTC 342515 29 100.0 36 ............................. ACGATTGGTCGAGATAATGAAAGAACGAGGGTTCCA 342450 29 100.0 37 ............................. GAGAGAACGTGTAGTCGTGAGGAAAGGAAGTGATAGC 342384 29 100.0 36 ............................. TTTTCACCGCAGATTCAAATATTTAAGTGCAAAGGA 342319 29 100.0 36 ............................. CTCTTAAGAGAGTAGAAAAAGTAGAAAGGTTAGAAA 342254 29 100.0 35 ............................. CAGGGTTAGTCTGGCGTATGACGATTTGCGACCTG 342190 29 100.0 38 ............................. TCATGCCACATCTTTTGTGAAGACGAACGAAGCTACAA 342123 29 100.0 36 ............................. CCATTTGGCGCAAGTACTCCACCATACCATTTACGA 342058 29 100.0 35 ............................. AAGAATTCTTTCCAGAACTCAAGATCAGGATACTC 341994 29 100.0 38 ............................. ACCTTACAATGATGGGCAAACTCCCACGCTCACTTCAA 341927 29 100.0 36 ............................. TGATATCCGCGACACTGATAGAGGCGGTCACACGAC 341862 29 100.0 38 ............................. TGCTTTCCCTCCTCACGAAATACTCCCAGCTTCTCACC 341795 29 100.0 38 ............................. CGTTCTTCCATCTTCGTCGAGTTCGGTTCTTATCACTT 341728 29 100.0 36 ............................. CCAAACCCTCTTTCACGAGTTACTTCACGCGGTGAT 341663 29 100.0 36 ............................. TGTTTCCGAGGCGATGCTCTCGAATATCGCGGACGC 341598 29 100.0 36 ............................. GCCGAGTTCAAATGAGCGCGTTTTCCTTCACGAAGA 341533 29 100.0 36 ............................. ATAGGTTAGTGGGCACGTAAACGCTTCTTGTGGTTA 341468 29 100.0 37 ............................. CTCTCACACCCGACAACGCACCTGAAGGGAGTGTGGT 341402 29 100.0 36 ............................. TATCCTCGCAGTTCTTGCATACAACTGGGGAATCGG 341337 29 100.0 36 ............................. TTGGGACTTCTTTTTGAAAGGCGATGTCTCAAAGCT 341272 29 100.0 36 ............................. CCCTTTTAAGGGGGTGTGATGATGTCTTCGGGCATA 341207 29 100.0 37 ............................. CTGTGACGAAGAAAACTTTAAAGCTGTGGTACACCTC 341141 29 100.0 37 ............................. TAACACCGCTGGGACGTGTGAGTAGAGTGACAATCCA 341075 29 100.0 39 ............................. CTCGCAAGAATTGATAGATTCGTGGTATAGAACGACTGA 341007 29 100.0 38 ............................. CCGAGGATCGACTTTGTAATAACGCGAACACGATTCTC 340940 29 100.0 37 ............................. CGGTTCCTATATTACGGGTATGTAAACTGGTATACAT 340874 29 100.0 38 ............................. ATCAGTGGCACTTTGAATTACTTCGTAAAGCGGATGGG 340807 29 93.1 0 T...G........................ | ========== ====== ====== ====== ============================= ======================================= ================== 78 29 99.9 37 GTTCAATCGAATCTATGAGGAATGGAAAC # Left flank : AATCTATCGCATTGGTATAACGACCAAACAGGATTCCAGAGAAGTTCATCCGTACTCATGTTCTGACTTATTGATTCTCAGGTGTGTGGTCATATTGAATTAATAGTGCTTTAACTTGGAATAGCAAAACCTACGATTCCTAATCGTAAATGCTCTTTACTGAAGCTCTTGACAGACGCAGTGTTAGATTATTAATCATTTGTGAAAGAGCAAAGTTAATTGGGGATGTAAGATGATAGTATTCATCTTTTGGTGTGGTTATCCGTTTATTTGTGAAATTTCACAATCATCCTGGACAAATGTTAACGAAAGGCTTGCAAGAGTGTTTTGAGACAAATGGACCTTCGATAGAGGGAAAAACTCAGGAGATTCCTACTGAAAGTCGACGCGATGTTTTATCAGGACTCGTGGACAAAATCGCAAAAATGATGGTTCTTCGAGCTAAGTCAAACCCAGCGTACCCCTTATTATGAAGATCCGTTATTATATAATATCTATGG # Right flank : TTGAGCGAGCCACCACAATCTTCATGTATCTCGCCAAGAACTCCGAGTATCAGAAGATCGGCCTTCACCCGAACCTTGAACGGTCCCTCCGCATTTTTCCTTATCACAACACTCCCGTTGAAGTCGATGTTTCCCGTATCGTAGCCAAGATCTTTGTCGATCACGAGCAGTTCTCTTATACACCTTCGAATCTTTCAGTACGGTTGACCATCGCAGTTGGCAAGGATCTGCATCCCATCTGGTGACAAGCGAAGGTTTTCTCCTATGAAACTCGCCAGGTTAACGTCTTTTGGTTCTTGAACCTTGACGAGTTCACCGGTCACTGTTAAACGATCTTCACCTTCGAAAGCTTTCCTCTTGATCGCAAGTACATCGCCCTTGTTACACGTGAATATCTTGTAGAGCGATGCGGGATCCACCGACTCGCCTTCCTGAGGTTTTTCCAGAACGAAACCGCTGGCTGGGAAGAGAAATTCGACGGATGCGTCTTTGGGTAGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAATCGAATCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 439364-441307 **** Predicted by CRISPRDetect 2.4 *** >NC_022795.1 Pseudothermotoga hypogea DSM 11164 = NBRC 106472, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 439364 29 100.0 36 ............................. TTCCCAAAGCGTAGTAGTTCAGCTCGCCTGAATTAG 439429 29 100.0 37 ............................. CGTGAGGCGAGAAAGAGGTTTGGGCACAACATTGCTT 439495 29 100.0 35 ............................. CTTATGAAAAGAGGTGGGAAGATGATCTTGTCTAC A [439523] 439560 29 100.0 36 ............................. CAGGTTGAAGAACGTAGTACACGTCCGTTGTGTTGC 439625 29 100.0 39 ............................. GAGTCAAGGGCGAAGGGAGAGAAAAGTCCACGTAACCAC 439693 29 100.0 35 ............................. CCGTCCGTTCGGCTGGATTACAAGCACAGACACAA 439757 29 100.0 37 ............................. CTGTCATGTCTATAGTCTTCCAAGGTACGTCAGAGAC 439823 29 100.0 37 ............................. AAAATGATGTACTCAGATCCCGCAACAGGAGCCCAAG 439889 29 100.0 36 ............................. TAATGGGATTGATCGTCAACGGGGTGGACTTAAAAA 439954 29 100.0 37 ............................. AAACAGGTCAACATCTCTGTCAAGGTTGAAGAAGTGA 440020 29 100.0 36 ............................. TTAGATCAAGTCATCGAGGGTGTGACAGGATACCAG 440085 29 100.0 36 ............................. CTGTGTTCACTACTTGCTCTTTGGTCAACAGCTTTG 440150 29 100.0 38 ............................. CTGGGAGTGCCCTTCCAGCTTACGAAAGGTGTATTAGG 440217 29 100.0 37 ............................. AGCGCGGTGGCGACAATCACGGAAGAGACCGCGAACA 440283 29 100.0 38 ............................. GTCCGTCCATCTATCAGGAGCGCGGTTCTTGAGGAAGA 440350 29 100.0 35 ............................. CTATAAGCTCCGCTCGTACCGCCTGTAACCGAAGG 440414 29 100.0 37 ............................. ACAGCCGGGCGAAATCATCGAAATACCCGTCGAAAAG 440480 29 100.0 35 ............................. CTATAAGCTCCGCTCGTACCGCCTGTAACCGAAGG 440544 29 100.0 37 ............................. ACAGCCGGGCGAAATCATCGAAATACCCGTCGAAAAG 440610 29 100.0 39 ............................. CATAAAGAACGTTGACGGGCTCTTGCTGGTGGTAATTCA 440678 29 100.0 39 ............................. CAATCTTTTCGATGATTCCATACTTTTGCTGTGCGGTTG 440746 29 100.0 41 ............................. GCAGTGTGTATGTGCTTTTGATTGACAAGCGTGATTATAAG 440816 29 100.0 38 ............................. CTTGGATACGTTTGTCTGAAACGCATCTTCAGATTCTT 440883 29 100.0 38 ............................. CTTGGATACGTTTGTCTGAAACGCATCTTCAGATTCTT 440950 29 100.0 36 ............................. CTTTCAGAAAGTAATCTTCCGTTGCGTTTGTCAGGT A [440978] 441016 29 100.0 35 ............................. TTGAGTGTGTTTAGAACATGTTTATTGGTATCAGA 441080 29 100.0 37 ............................. CAGGCAAGAGCTAATTGCCAGCGCCAGACATGACCAT A [441108] 441147 29 100.0 35 ............................. CGGTCTGATTTACAAAATCAAGGTACAGCCTTTTC T [441175] 441212 29 96.6 39 .........T................... TTGGCAACATAACGAGCCATCTGATCTTGTCTCAATCGC 441280 28 93.1 0 ....................T....-... | ========== ====== ====== ====== ============================= ========================================= ================== 30 29 99.7 37 GTTTGATCTGAACTATGTGGGATGTGAAC # Left flank : CCTCTGAAGGCGTGGTGGTGATGCCTTATTACGTAATCACATACGATGTTTCGGAACAAAGAGTAAACAAAGTTAGAAAGATCTTGAAAAAGTACTTCGTATGGGTTCAAAATTCTGTTTTTGAGGGGGAAATTAGCTTGGGCAAGCTTGAGAAATGTAAGCAAGAGCTTTTGCAAGTCATAGATCAAAGGGAAGATTCAATATACATCTATAAAGTTCATCGTCTCACAGATCTCGACAAGCAAGTAATCGGCGTAGAAAAAGAATTTACCGACAACTTCTTGTGAGTTTGCAGTAAACCTCTTTACCTGTTGAAAGTATAAAGTTCATTGATCTCATCGAATCAAACCGATGTTTTTCACAATCATGGTTTTATGTAACTTGGGGTTCGCTGCAAAGACCTGAAAGAACGAAAGCCAAAATTTCTCGTCCGACAATATTGAAAATTTCTCTGAAAATCGATCTCCCTTTGCTCGGCTTTCTACTTATGAATTAAGAGG # Right flank : CCAGTCGCAGACGGACCAAGGCGTTGCCAAAACGCCTATAAGCGATTCGGCAACAGAAAGTGTTGCCGAAAAGCATGCTGACCAATCGGCAACTGTTGCCGAACAGCGTACTACACAAACGCTAACGTCTGGCACCCAACCAGCCGAAACCGATCAAGGTGTTGCCAAAAAGGATATATCCCAAACGGCAACACCAAGTGTTGCCAAAACGGAAACACCCCAGGGTGTAATACCCTTAGGTGAGACATTAACAGCGGAAGAAACCATAGAAATGGTAGATAGACTCTGCGATTTGAACACTACACCGACAACTATTCACGTTCTATGCGGATTCTCGTCAAATACAAAAACACAAAATTGATGTTCAGCGTGCGGAAATTGGCACTTGAACTGCATCATGATCATGCGGGGCTACAGAAATACCTTGGGGAATTGCACAAACACGTCGTCTTGACCGTGTTTTCGTCACCTCGAGGTACCATCATAGACTTCACGCCACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATCTGAACTATGTGGGATGTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //