Array 1 661457-662289 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LR793266.1 Streptococcus salivarius isolate clinical strain from anonymous patient of Limoges Hospital, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    661457	    36	 100.0	    30	....................................	CGTCAGCGCTACAGTTAGGCACAGTGAGCG	
    661523	    36	 100.0	    30	....................................	ATCAATCATCTCAATCTTTTGTTCTGTCTG	
    661589	    36	 100.0	    30	....................................	AACTCTATCTGGGATAATGATTTAGAAACA	
    661655	    36	 100.0	    30	....................................	TTTAGGGATGTTCGTTAGTGATTTGGTAGA	
    661721	    36	 100.0	    30	....................................	TTTATTTTGTTGCTATATAAACATGCTACT	
    661787	    36	 100.0	    30	....................................	TAGATTATTAATTTAATCTATAAGGCTCAT	
    661853	    36	 100.0	    30	....................................	AGAATTTGGTGAAATAAGCGAAGTATATGC	
    661919	    36	 100.0	    30	....................................	TATTCTGTTATTTCAATTTCTTTCAGTACC	
    661985	    36	 100.0	    30	....................................	TGATACGTACCTTTGCTTAGTGTGGTCTCA	
    662051	    36	 100.0	    30	....................................	GAGGTTAGAAGGTATCATTTCTGACGAGCT	
    662117	    36	 100.0	    30	....................................	TCCACGCATCAAAAAGTTCACGCGGTAAGG	AGATT [662137]
    662188	    36	 100.0	    30	....................................	AAAATCAACGGTTTAGGCTTATCTACGTTG	
    662254	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        13	    36	 100.0	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	                              	       

# Left flank :   TTGATAGTTTTATTTCAGAGGAATCTTATGGTAGTTTTTATAAGCAAATTGGTCAGCTAGTCAAAAAGTATCCAAACCTAACCTTTATTATATTTCCAAGTGACCAAGGCTATTTAAAGATTGATGAAGAGAGTAGTAGGTTCGTCAATATTTTATCTGATCAGGTAGAACATTTGTATGATATTGAGTTTATGTATGAAAGTGTAGCGAAACATTATCCAAGTAATAATTTTCCGACGCGAGAAGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTGTTAACAAAAATGACGAGACAACCTAGTCTCTCACTCGTTGATTCAGTAATTTTGAATATCTTAAATCAGTTGTTTCACTTTAACTATTGTATAGGATATTCTCAGACACCTGATGAGGAGCTATTACATAGATATTTAGAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG
# Right flank :  CCCGTGTCCATGCTCCATACGCACTTGAGTGTTTTTGTACTCTCAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAGATTTAAGTAACTGTACAGGTTGATTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGATTGTCAGGCTGACCAACCTCTTTGACCTCAGTCAAATTGAGAATAGGCAGGCTCTGTTTGAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTTACCCAGGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATTCCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAGACAAAACCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTAGGAT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-11] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.37   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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