Array 1 34076-31911 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXB01000028.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUT642TT NODE_28_length_57742_cov_14.4856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34075 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 34014 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 33953 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 33892 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 33831 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 33770 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 33709 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 33648 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 33587 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 33526 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 33465 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 33404 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 33343 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 33282 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 33221 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 33160 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 33099 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 33038 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 32977 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 32916 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 32855 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 32794 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 32733 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 32672 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 32611 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 32550 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 32489 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 32428 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 32367 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 32306 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 32245 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 32184 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 32123 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 32062 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 32001 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 31940 29 96.6 0 ............T................ | A [31913] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52269-50838 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXB01000028.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUT642TT NODE_28_length_57742_cov_14.4856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52268 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 52207 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 52146 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 52085 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 52024 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 51963 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 51902 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 51841 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 51780 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 51719 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 51658 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 51597 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 51536 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 51475 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 51414 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 51353 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 51292 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 51231 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 51170 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 51109 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 51048 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 50987 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 50926 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 50865 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //