Array 1 340506-341631 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIP01000003.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_62 contig0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 340506 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 340567 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 340628 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 340689 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 340750 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 340811 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 340872 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 340933 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 340994 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 341055 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 341116 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 341177 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 341238 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 341299 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 341360 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 341421 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 341482 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 341543 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 341604 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 358255-360786 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIP01000003.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_62 contig0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 358255 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 358316 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 358377 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 358438 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 358499 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 358560 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 358621 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 358682 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 358743 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 358804 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 358865 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 358926 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 358987 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 359048 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 359109 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 359170 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 359231 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 359292 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 359353 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 359414 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 359475 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 359536 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 359597 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 359658 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 359719 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 359780 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 359841 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 359902 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 359963 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 360024 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 360085 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 360146 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 360207 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 360268 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 360329 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 360390 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 360451 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 360512 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 360573 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 360634 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 360696 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 360757 29 96.6 0 ............T................ | A [360784] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //