Array 1 100390-101086 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAS01000009.1 Bacillus stratosphericus LAMA 585 Contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 100390 32 100.0 34 ................................ ATAGTACGTTAGTCTCCTTTTCGATTAGGTTAAA 100456 32 100.0 33 ................................ TTGCAGTAATGTTAACAGTGATACATCATCAAT 100521 32 100.0 35 ................................ TGCTTCAGTTGCAACTTTAGCAATCCCTTTAAGAG 100588 32 100.0 34 ................................ TTGACCACTATTTGAACCATTCTCAATGTCATTA 100654 32 100.0 35 ................................ CGAAATATTTAATGATGCGATAACATCAAATGAAG 100721 32 93.8 35 ...........C.......T............ CACGCTTTGATGATTCCTGTTAAAACGTCAATAAC 100788 32 93.8 35 .G.........C.................... ATTCGGGCCATCAATTGAAAAGAAGACTCGCAAAA 100855 32 93.8 32 ........T..C.................... CCAACAACGTTTTTTGCTCCCTCAACAGCTTT 100919 32 90.6 34 ........T..C......A............. TGTCGGCTGCGGCACGATTAGATATTCCGCTGGC 100985 32 90.6 34 ...........C.......T....C....... ATGCAGTGACCTCCTGAATGTATGATGAATTGTT 101051 32 87.5 0 .......C................T..TC... | A,G,CA [101060,101068,101074] ========== ====== ====== ====== ================================ =================================== ================== 11 32 95.5 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATAGCCGACCGGCTGGGCGAATCAAGACAAAACATCTCAAACATTCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCAAGAAGACAAAATCACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACTGGCTGATTTACCAAGAAGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGATGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAGAAAATGTATATTATGTAGAGGTGAAAACAAAATCCTATATTGAAATTTGTGAATTTTAACAATTATTCCCTAAAAAATGTTACAATTAGGGCGGAAATCGTA # Right flank : TGATTGTGTCTTAAACGGTTATGACTACCTTAAAGATCATCTTCTTACAACACCCTCTTTCAGATACAAAAGCCTTCAGAATATACTGTTCATTTGTATAGTGAAAACATGACTTTTTGGAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTAAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTTATTTAGATTCAAATTTTATCCATTCGTAAAAAATGAAGGAGGAAATGGTTTGGGTGAAACGAAGCAAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGTGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAG # Questionable array : NO Score: 8.99 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 108703-109130 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAS01000009.1 Bacillus stratosphericus LAMA 585 Contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 108703 32 100.0 35 ................................ CACAGGTACAAGAGGAAAAGCAGTCTTTTCCCACA 108770 32 100.0 33 ................................ CCTATCGGTCGTCCCGAATATTTGCACGGAGAA 108835 32 100.0 33 ................................ TTTAGGCAAAGGCAGGCGGTCGCCCGAATCTTG 108900 32 100.0 35 ................................ AAGCATCAAAAGTAAAATTGGTGTAATTCCGCCAA 108967 32 100.0 33 ................................ TCATCAAGTATATAAGGGTGAGCCAGATGAAAA 109032 32 100.0 34 ................................ GATAACCGAACATGGTGCGGTACATTCCATAAAA 109098 32 90.6 0 ...................T....G..A.... | T [109127] ========== ====== ====== ====== ================================ =================================== ================== 7 32 98.7 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCTGAGACAGTAAAGGGAGCATTTAAAGTAGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGCTAGATAAGATGAATAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAAGCAGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTAGAACATTCGCACCATTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGAGCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTGCGAAAAACATAACTCTGCTTCCTGACTCAGTAGCCATGTATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTAAATAATTAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGAGAAAAAGTGTATATTTTTTAGGGATGAAAACAAAATTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATTTACAAGCCACAGGCTTCGGGTACTATGACAATTGTCGCACTCTATATGAGTGCGTGGATTGAAATATCGGTGTTCCCCTTCCAGTGAGGATAATCATCGTCGCACTCTATATGAGTGCGTGGATTGAAATCCATGAATGACCTTTCCCTCGTATACCTTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 109437-109796 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAS01000009.1 Bacillus stratosphericus LAMA 585 Contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 109437 32 100.0 34 ................................ TTACAAGCCACAGGCTTCGGGTACTATGACAATT 109503 32 100.0 33 ................................ ATCGGTGTTCCCCTTCCAGTGAGGATAATCATC 109568 32 100.0 34 ................................ CCATGAATGACCTTTCCCTCGTATACCTTTTGTC 109634 32 100.0 33 ................................ TGCATGAACCTTTCCAATTGGCATTAAAGCGAA 109699 32 100.0 33 ................................ AATTCTGTTTGAATAATCAATTCTTGTTTAGTT 109764 32 87.5 0 ...........C.......T..A....A.... | T [109793] ========== ====== ====== ====== ================================ ================================== ================== 6 32 97.9 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TCAAAAGTAAAATTGGTGTAATTCCGCCAAGTCGCACTCTACATGAGTGCGTGGATTGAAATTCATCAAGTATATAAGGGTGAGCCAGATGAAAAGTCGCACTCTACATGAGTGCGTGGATTGAAATGATAACCGAACATGGTGCGGTACATTCCATAAAAGTCGCACTCTACATGAGTGTGTGGGTTAATAATTGCGAAAAACATAACTCTGCTTCCTGACTCAGTAGCCATGTATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTAAATAATTAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGAGAAAAAGTGTATATTTTTTAGGGATGAAAACAAAATTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGTTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGGAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTCAATAGTTATTTATAGTTAATTGTGTATACAGGTCGCACTCTACATGAGTGCGTGGATTGAAATTAATTTCTTCAATTGTTAATCTATCTGTATGGGGTCGCACTCTACATGAGTGCGTGGATTGAAATATCAATCTCAATCTCAATTTCTCCACCGGCCTGCCAGTCGCACTCTACATG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 110083-110644 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAS01000009.1 Bacillus stratosphericus LAMA 585 Contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 110083 32 100.0 33 ................................ TCAATAGTTATTTATAGTTAATTGTGTATACAG 110148 32 100.0 33 ................................ TAATTTCTTCAATTGTTAATCTATCTGTATGGG 110213 32 100.0 36 ................................ ATCAATCTCAATCTCAATTTCTCCACCGGCCTGCCA 110281 32 100.0 35 ................................ CATAATCTCGCCCATAGTAGGCTAGACTTGTAAGG 110348 32 100.0 34 ................................ CGAAAAAAGAAGAGCCAACTGAAAAACCCAAACC 110414 32 100.0 33 ................................ AAAAAGAATGTATGATGCAAACAATGGAGGTAT 110479 32 100.0 35 ................................ ATCAATAAATGGAAAGAAAAGAAGCTCTATCAAAA 110546 32 96.9 35 ..........C..................... TCGCCAACCTCCGCGTTTCTATCCACCACAACATA 110613 32 78.1 0 ..........C.........A.A...CAC.G. | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 97.2 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AGTGCGTGGATTGAAATCCATGAATGACCTTTCCCTCGTATACCTTTTGTCGTCGCACTCTATATGAGTGCGTGGATTGAAATTGCATGAACCTTTCCAATTGGCATTAAAGCGAAGTCGCACTCTATATGAGTGCGTGGATTGAAATAATTCTGTTTGAATAATCAATTCTTGTTTAGTTGTCGCACTCTACATGAGTGTGTAGATTAATAATTGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGTTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGGAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTTCTGCGTTTTATACAAATTCAAGTACTATCCTGTTCAAAATCTACACATATGAATAATTCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGTACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATTTTCATAATCTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATGATCTCACCATTCATACTGCGTCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATCGTAGGCGAAATAATAATGTCCTCAATTTCAT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //