Array 1 2998547-2998003 **** Predicted by CRISPRDetect 2.4 *** >NC_003228.3 Bacteroides fragilis NCTC 9343, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2998546 29 100.0 34 ............................. GAACGAAAAGGCGGGCTGGATTTCAGCGGACTTC 2998483 29 100.0 36 ............................. GGAAATGGCGGAAGGATTGGCCGTCAGGGTAACTGA 2998418 29 100.0 37 ............................. TTAATCATCACATTGATCTTCTTAATCGCTTCATCAG 2998352 29 100.0 34 ............................. CCGAGTACTTGTACATCGTACAGTTTCCCTTGCT 2998289 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 2998226 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 2998161 29 100.0 34 ............................. TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 2998098 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 2998032 29 93.1 0 .........................G.C. | A [2998008] ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTTGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGGTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGAAATTTTTTCTTCCTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 4661170-4663207 **** Predicted by CRISPRDetect 2.4 *** >NC_003228.3 Bacteroides fragilis NCTC 9343, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 4661170 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 4661247 47 100.0 29 ............................................... TGATTTGGCATCTGCTATTTGATCAATCA 4661323 47 100.0 30 ............................................... GCAATTACCCCAATCCTTCATGCCCTGAGA 4661400 47 100.0 30 ............................................... TTTGCCGGATACCTTAGTAGTGGTAGTCAC 4661477 47 100.0 30 ............................................... GATAGCGGCGGGGGAGCGAACGGCAACGAA 4661554 47 100.0 29 ............................................... AGAACCATCACGAATCAGATTCCAATACT 4661630 47 100.0 30 ............................................... ATCCTGCGAAATTTCGACCTTATCGCCGGG 4661707 47 100.0 29 ............................................... GTTATTGTAAGAGTCATAAAAGCGTGTAC 4661783 47 100.0 30 ............................................... TTAAATACCTCGTCAAAAGCGGATTCCGCA 4661860 47 100.0 30 ............................................... GTCTTGGGAATCTGTACGATTGTTGCAGAA 4661937 47 100.0 30 ............................................... TCTTAACAATGCGCTGCATCTCTCGAATAA 4662014 47 100.0 30 ............................................... CCACAAATCTTTATTCCAGTTGGCGTACCG 4662091 47 100.0 30 ............................................... AAACCATTCAAATATCTGCGCAATTGGGTA 4662168 47 100.0 29 ............................................... ACTGTTGAACTTTTTACTCGTAATCCTAA 4662244 47 100.0 30 ............................................... TCAATTGACCCGAAAGTGCAACGGTCAGGT 4662321 47 100.0 29 ............................................... TAAGGATAGGAATATTCAATCTTATACAG 4662397 47 100.0 29 ............................................... GCATAAAGAACTGGCATATTACCACTGAC 4662473 47 100.0 29 ............................................... AACAGAACTATCAGACACTATCTCTGAGT 4662549 47 100.0 30 ............................................... CGAATGGTCAAAACTATGCTGCTCAGGTTA 4662626 47 100.0 30 ............................................... CTCCAACTCTCGAAGAGCAGCAACAATATC 4662703 47 100.0 30 ............................................... TTCTTGCGGTTTAAACACTTCATTAAAAGC 4662780 47 100.0 30 ............................................... AAACTTAGTAACAGAACCGACAATATTAGA 4662857 47 100.0 29 ............................................... TCTTTTAACCTTTTATTAGCATTTCTCAA 4662933 47 100.0 29 ............................................... TGCTTAGTTATAACGCAGAATATGCACAT 4663009 47 100.0 29 ............................................... AGTGTCTTAAAGAGGTGATTAATGAAATG 4663085 47 100.0 29 ............................................... AGACTTAGCCATTTGTGTGGCATTCACCA 4663161 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 27 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //