Array 1 347934-350547 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDBX01000005.1 Listeria monocytogenes strain ICDC_LM0476 LM0476Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 347934 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 348000 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 348066 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 348132 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 348198 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 348264 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 348330 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 348396 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 348463 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 348529 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 348595 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 348661 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 348727 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 348793 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 348859 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 348925 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 348991 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 349057 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 349123 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 349189 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 349255 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 349321 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 349387 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 349453 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 349519 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 349585 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 349651 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 349717 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 349783 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 349849 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 349915 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 349981 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 350047 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 350113 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 350179 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 350245 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 350311 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 350377 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 350443 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 350509 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [350534,350540,350543] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //