Array 1 62504-61499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRW010000020.1 Pectobacterium odoriferum strain CFBP8735 Pectobacterium_odoriferum_CFBP8735_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62503 29 100.0 32 ............................. GCCGTCAAGGTTCCGATGACCGACATGCGCAA 62442 29 100.0 32 ............................. TGCAGATGGAACATCACCAGTGTCAGCAGTAC 62381 29 100.0 32 ............................. CAAAAAACGTGAGCCATTGGATAATGGCGGCT 62320 29 100.0 32 ............................. TTGATCCGATGCCTGAACACGGTCCCTCAAAT 62259 29 100.0 32 ............................. GTACTGCGTGATGCTACTCGCGCTGGTGCTGA 62198 29 100.0 32 ............................. CAATCTTGCTCTTCCTGCGTTTTTGTCATGCT 62137 29 100.0 32 ............................. GATGAGAAAACATTGTAGTTTGACGAGTAACC 62076 29 100.0 32 ............................. CGCTGGCTGACCGCACGCAATGGCTACGCGAC 62015 29 100.0 32 ............................. GATTTTGTAGGCTTCTGGGTCAATGCACATGA 61954 29 100.0 32 ............................. CCTTGTCCTGCCTGTTTGTCTTCAATCCCCAT 61893 29 100.0 32 ............................. GGCGCGGTGCTGGATTTGGCCATGTTGCAGGC 61832 29 100.0 32 ............................. GAAACGATTCTTGTAGAAACGCAGTACCAGGC 61771 29 100.0 32 ............................. TATTCATGTTATTTAGTCTCAAGATACGATTC 61710 29 96.6 32 ............................A TTAGCAGATGGGATTCCGTTTCTAACTATTCC 61649 29 100.0 32 ............................. TAGTTTCCCTGTATCATCTGTGACAGCCTTAT 61588 29 100.0 32 ............................. AACTGATCGAGCGCCGCTGTTTCGCTATACAT 61527 29 93.1 0 .........................C.T. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGGGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCAGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACTTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGGGGCCAAATCCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTAATGGTGACGCGCTATGCCAATGATTTTTGTCTTCCGTACGTTACTGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGCCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGAAGCGGTGCCGTTCCTGCTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGACGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44700-43653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRW010000013.1 Pectobacterium odoriferum strain CFBP8735 Pectobacterium_odoriferum_CFBP8735_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 44699 28 100.0 32 ............................ AGAGCCGCCGTTACCTGTTCCCGTCACGCGCC 44639 28 100.0 32 ............................ AACAAGCTGATTACCGGAACGCTGGAGGTGAA 44579 28 100.0 32 ............................ CGATCAGGACGAAAACGCGCCCGTCAGCCGTG 44519 28 100.0 32 ............................ ACAGCAAATAATCACCATCAACCAGAGGGAAC 44459 28 100.0 32 ............................ TCACATTCATAACCGGATTGCTACCCTTCATT 44399 28 100.0 32 ............................ ACGCACAAAATTGCACTTCTTTGCAAGACGTA 44339 28 100.0 32 ............................ GCGAGCAGCAGCAGCGGTTACAGCCTTGGTTA 44279 28 100.0 32 ............................ AGTTTATCGCCCGGTAGAGCGTCCGACAGACC 44219 28 100.0 32 ............................ GTTGCTACTCGGTTATCGACGTTTTCACGGTT 44159 28 100.0 32 ............................ AATCCATTGCAGGCGATGTAACGGCGGCTAAT 44099 28 100.0 32 ............................ GTAGAGCCGGATGGTTTTGAGCGACTGACACT 44039 28 100.0 32 ............................ AAAATGCCGGAATGACAAAGCTCTACTGTGGA 43979 28 100.0 32 ............................ GCGCTGACTGGCTACAGTGATAAGCCTCTTGA 43919 28 100.0 32 ............................ GCAAACATCGCACTGATGTGTAGATAGACTAT 43859 28 100.0 32 ............................ TTGAGCGCGTCCTAGCGCTTGAAAACAACAAC 43799 28 100.0 32 ............................ AATCTTCATATACGTGCTCAGGCCAGCCAAGA 43739 28 96.4 32 .C.......................... TGCAAATGTCAACTATCGGCGGAATGGAAGGG 43679 27 75.0 0 ...........T.C..A...-..C..GG | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCGTACCTGACGGCGTGAAATTTCGCACCGTGCATCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACTCCTGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTGACCCTTTTTTTACGACCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGTCATATTTTCTTTAATAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : CTTATAGGAATGCGTCGCTGGCGCGACGCATTTCGGGGAGCTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCATTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTGCGACAACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGATTCACGCGCCAGAATAGGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 53276-55104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRW010000013.1 Pectobacterium odoriferum strain CFBP8735 Pectobacterium_odoriferum_CFBP8735_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53276 28 100.0 32 ............................ ATGATAATCACAAATGTTAACGTTAACTTGAA 53336 28 100.0 32 ............................ TTGCCTATTCTCGCAAGACTTTTTATATTAGA 53396 28 100.0 32 ............................ TATTAGTGAAACGGCCAATTTTACGCAGTATC 53456 28 100.0 32 ............................ AATACCCCCGTCGAGATCCCCCAGGAATTTTC 53516 28 100.0 32 ............................ AATATTCAATACAGCAAATACAAAATCAGGTC 53576 28 100.0 32 ............................ ATGTGGATGACGGCAGAAAAAGAGTGGTGTGC 53636 28 100.0 32 ............................ CGAATGACACCTGCGCATTGCCGGACACCCAA 53696 28 100.0 32 ............................ GCTTAGACTGATTCAGGCGACGATATCCGGGT 53756 28 100.0 32 ............................ CGCAGCCCTGATGAAATATTGAAAGACTTCAC 53816 28 100.0 32 ............................ ATGAGTCAGCACGCGAGGAAGATGTTTTTATG 53876 28 100.0 32 ............................ AGTAAAGGAACACAGCAAATATGACGGCATGG 53936 28 100.0 32 ............................ AAGTTGGATCACTGGATATTGCCGCTGCCACT 53996 28 100.0 32 ............................ AGCGGGCGGCTGGAGTACGACACCAGCCACAC 54056 28 100.0 32 ............................ AACGGGAATGTGCCGGGTTCAACTGGCCTCCA 54116 28 100.0 32 ............................ ACTCTACTTTCCTGGAAACACTCAACAGTTGT 54176 28 100.0 32 ............................ GACTATGTAGCCCCAGCACTCGGCATGGAAAT 54236 28 100.0 32 ............................ AAAACCTGTCGCAGCGAAATCATCGCTCAGAC 54296 28 100.0 33 ............................ CTCGCGCTTCATGCGCGGGTCGTAATTAGCGAA 54357 28 100.0 32 ............................ GCTTGTAGCTGGCGTACGCCAGCGCCGCTCTC 54417 28 100.0 32 ............................ CGCAATCAGGATGACGCGCTTAAAATGGTCGC 54477 28 100.0 32 ............................ AGAGGCAATAGTTAGCGCTCAGGAGTCCACCA 54537 28 100.0 32 ............................ TCGCAGGGTGACCGCTGAATACAGAAAGTCGC 54597 28 100.0 32 ............................ GTGCGTAGCCTCCGGCCATGTAACTTGCTGGC 54657 28 100.0 32 ............................ ATTAACGAAATCGGGCAAGTGATTGCACATGT 54717 28 100.0 32 ............................ GCGTAAGGCTGGCTGGTTTGCCGAAAGCAGGA 54777 28 100.0 32 ............................ CAGAACCAGTCACCTTTCTGAACCAGTCAATG 54837 28 100.0 32 ............................ GAGATATACAGATCGGTAAAGACGTGCATTCG 54897 28 100.0 32 ............................ GACTTTTTTGTGTATCCACGAAACCGGGATAG 54957 28 96.4 32 ...........G................ AATCCGGTTGATACTCCAACTGTTGATGTTAT 55017 28 96.4 32 ...........G................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 55077 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTAGCGATGGGGATATTCCAATACAGCGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCATGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGTTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCCTTAAATAACGAATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCACAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 63506-64853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRW010000013.1 Pectobacterium odoriferum strain CFBP8735 Pectobacterium_odoriferum_CFBP8735_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63506 28 100.0 32 ............................ TACTATGGAAGCGAGGTTTTAATGCGCGCCAA 63566 28 100.0 32 ............................ GTGGTCTATTCCGTGGTGTTAGATACCGCCAT 63626 28 100.0 32 ............................ GTCGTTTGTACTGGCCGTGTCCGCATTGTGGT 63686 28 100.0 32 ............................ ATTAATCTGGTTATTGGAGAGTCCCGCCCAAA 63746 28 100.0 32 ............................ TATGAATCAGGTCGCCACGGCCATGATTATGA 63806 28 100.0 32 ............................ TGGCTGACATTACGAACAAATCAACTGCGCGC 63866 28 100.0 32 ............................ CAGCCCGAGCCGTTGAAGTGAGTTATTTCGGC 63926 28 100.0 32 ............................ TGGTCGGTAATTACCACACCGACGCCATTTAC 63986 28 100.0 32 ............................ GCCCGCTGCCGTCGCAGGTTTACGGGTGACAT 64046 28 100.0 32 ............................ TATTTGACGGCAAACGGAATCTGTCTAAAGAC 64106 28 100.0 32 ............................ AGCAATCCAGTTACCGGAATCATTATTTATGC 64166 28 100.0 32 ............................ CGAACCGATGGGTAAATGTTTGAGCAAAGGCG 64226 28 100.0 32 ............................ GTGAGGTCATCTTTAAAGGCCAGCCGTTGAAC 64286 28 100.0 32 ............................ ACGACCCGAAAGCCGCAATCAAGCAGCTGGCA 64346 28 100.0 32 ............................ AAGCTTCCACCGCATCACGAACAGCAGCGTGA 64406 28 100.0 32 ............................ GCTATGACACCAAACTTGAGAACGCGTATACC 64466 28 100.0 32 ............................ GTCATGATTTCAGCAGACACACCCAAGCGATT 64526 28 100.0 32 ............................ TACCCCGGAAGAGTAAAGGAGCAGTTCGACGC 64586 28 100.0 32 ............................ ATTGTTGACTGGTGGAAATCACTGGATGACAG 64646 28 100.0 32 ............................ CCCAGATGCCGCACTGATATATGCGATTTCCA 64706 28 100.0 32 ............................ TGACAGGCTTCGGCGAGGGTTCCCGCGTTCGT 64766 28 100.0 32 ............................ AAATGCATTAATGCAGCACTAATCCCAACCCA 64826 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 23 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGTATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATCAGCTAAGTATAGATATTAATCACTCGACTATATATCCATAGCATATGCAGATACTTGGCATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGCCGTAACTCATTGATTTTTAATTTCGATTATCTATGCTGATAAAAAAGGGTTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGTTAACTACCGTAAAATATGAACG # Right flank : AGACATGGCAACACTGAAAAGCGAACATGCGCAGTTCACTGCCTACACGGCAGTGAACCCCTCACTCCACAATAATCCGCTCGTCATTGTCTCCCAGACAGATACTTAACTGTTGACCGTCAGGGCTAAAGGCGCAGTAGGGGAGAGGTTCACGCAGGTAGAGATGCAGCGGGAGCGCGAAATAAAGCGCAACTAGCAGCAATGCCGCGACCGCTTTCGTATAGGTTGGACGTGGAGCGACTGGGTTGCGCCGGGCATGTCGATATTTCACGATGCCGATGGCGGCCATGCCTGCGCCCACCAGCATGGAAACATACAGTTCGCCGGGCATGGGGGAAAGTATCAGCTCTTCGCTTTCATAATCCTGCCAATATTGAATGCGCCACAGGGCGCTGATACCGATTTGCATCAGCCCCGCGAGTATCCAGGCAACACGCCATCCCGAGAGCCGAAAGAGCGCCAGAAAGCAGAATCCCGACGCGGCGCAAGACCAATAGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //