Array 1 273206-272290 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUI01000003.1 Bifidobacterium pseudolongum subsp. globosum strain 2089B Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 273205 28 92.9 35 ................AG.......... AGCACTCAAGACTCTGTTGCTCGGCTTCAATCAGT 273142 28 100.0 35 ............................ AGCACTCACATATCTGGATCTTGACAACAATCAGT 273079 28 100.0 35 ............................ CGCGCTCACAGAGCTGCGGCTCTACGTCAATCAAT 273016 28 85.7 35 .......C......G.A...T....... CAAACTCACGACCCTTTGGCTCGGCGCTAACCAGT 272953 28 92.9 35 .......C......G............. CGCGCTCACAGAGCTGTGGCTCTACGACAATCAGT 272890 28 92.9 35 .......C......G............. CAAACTTGCAAAGCTGTCCCTCGAATGGAATCAGT 272827 28 100.0 38 ............................ CGCGCTCACAGAGCTGCGGCTCTTCGGCAATCATCAGT 272761 28 96.4 35 ..............G............. CAAACTCACAGAACTGTATCTCGGCGACAATCAGT 272698 28 96.4 35 ..............G............. CGCACTCACAAAACTGTGGCTCGGATGCAATCAGT 272635 28 92.9 38 ....T.........G............. TAAACTCGAATGGCTGGATCTCGGCAACATCTATTATC 272569 28 89.3 35 ..G....A...........T........ CAAACTCACAAAACTGTGGCTCTTCCGTAACCACC 272506 28 96.4 35 ...T........................ CAAACTCACAGAGCTGTATCTTGCCGAGAACCAGT 272443 28 100.0 35 ............................ CGCGCTCACAAAACTGTCTCTCAGCGACAATCAGC 272380 28 96.4 35 .C.......................... TAAACTCGAATGGCTGGATCTCGGCGAAAATCAGT 272317 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 15 28 95.5 36 TGTCCTCGGTGGACCTGAGCCACAACAC # Left flank : GTGCGACCGGCGGCCATCCATGCCATCCGACCCCTCCGACACTTCTTACCCACCGCCTGGCATTTCTTCCCCAAGGCTCCTCCGCGGATAGCACGTTGCTACTTTGAGCCATAAGGACAAAATGAGAGGTCCTGATCAGCATGACATTCCCGCATGCATGTCCATAGCACAAAGAGAAGGATGAAGGAGCAACGACATGAAACACCACCACATCACCGCGCGACGCGCCTTCGGCGTCGCGTTGGCGTCGGCGCTGATGATGATCCCCTGCACGACCGGCGTCGCCGCCGAAACCGGCGTCCCGCTCGACGCCGCGCATTTCCCCGACCCGGCGTTCCGCAGCGTGGTCCAACAATACGACACGGACAACAACGGCACCCTCAGCCAACAGGAGCTGGCCGACGTGACCGAGATGTACGCGTATGAACGCGGCATCAAATCCGTGAAAGGCATCGAATACTTCACCGCACTCACGGACCTGCGTCTCAACAACAATCAGT # Right flank : CGCACTCACGAACCTGCATCTCAACGACAACCGGTTGCTGTGGGTTGGCGGCGTCGCGGACTCCGTCGATCTAGGTTTGTCCGGCCAGCAGTTCGGTCCGGTGTCCGCCGCTTCGTTGGATCTGGCGAAGGCCGCTCCGGGCATTGATGTGTCGCGGATTTCGAACGTGCAGGGCGGCAGGCTGCAGGGCACCGTGTTGTCGCCGACCAGCGCCGACGGTCTTGTCACCTATGATTATCGTTTCAGCGACACATACGAGCCGCTGCACGCGCAGGTGCGGTTTGACGCGCCGTCGTTCACGGTCGCGTTCGATGCGAATGGGGGATCCGGCAATACGGTGGTCTCGGTCGTCTCCGGAAAGACGGTCGCTCCGCCGGATGCGCCGACGCGCGACGGCTACACCTTCGCCGGCTGGTACACGGCGAAGGACGGCGGCAGCAAGTACGACTTCTCGAAGCCCGTCACCGGCGACCTGACGCTGTACGCGCATTGGACCGCGA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCTCGGTGGACCTGAGCCACAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 41350-37970 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUI01000005.1 Bifidobacterium pseudolongum subsp. globosum strain 2089B Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 41349 36 100.0 28 .................................... CCTTGAGGCGGCCATTACCGGCGGATTG 41285 36 100.0 28 .................................... TATGGGCGAAGTACTGCATGGACGCCTT 41221 36 100.0 28 .................................... AACGGCGACGGCGTTGATCGTCATGCCG 41157 36 100.0 28 .................................... CATGCCCCCAAGATTCAACGGAGTTGAT 41093 36 100.0 28 .................................... AACCCTTCTATAGGCTGACCGCTCTTTT 41029 36 100.0 29 .................................... TTGGTCGTAGAGGTCGGCGAGGCTCTTGA 40964 36 100.0 28 .................................... GCGAGCAATGCCTTGAAATCGCGCATGT 40900 36 100.0 28 .................................... GTCGTGTTCCAAATGTGGGATGTATCCA 40836 36 100.0 28 .................................... CTGGTAGACGCTGTGGTCGGGCGTGATG 40772 36 100.0 28 .................................... CTGGTAGACGCTGTGGTCGGGCGTGATG 40708 36 100.0 28 .................................... GGTGGCGGATGCGGAGCGGCATTCAACG 40644 36 100.0 29 .................................... GTGTAGGCGAGGGAGCTGATGAGCAGCAG 40579 36 100.0 28 .................................... CTGAACGTAATCACATAGCGCTGATTGG 40515 36 100.0 28 .................................... GCCATTCTTCGAACTCGTGCACGGTCGA 40451 36 100.0 29 .................................... TGCCCTCATGGATGGTTTGCCGGCCTTTG 40386 36 100.0 27 .................................... CGAGCAGTTGTAGAACATTTCGTTCAT 40323 36 100.0 28 .................................... ATCATGAGCATGGACAGCATGCACTGGG 40259 36 100.0 28 .................................... GACGGTCACGACGAACTCGAACTATGCG 40195 36 100.0 28 .................................... CTTTGACCTTGAGCTGGTCGGCGTTGCC 40131 36 100.0 28 .................................... GGTCGCGCAGCCGCCCCTCGTCGTTGCA 40067 36 100.0 27 .................................... TGATACAAGCAAGAAGGAAACTATTAT 40004 36 100.0 28 .................................... CTGATGAAACGCAACGGAATCCGCAACT 39940 36 100.0 28 .................................... CTGATGAAACGCAACGGAATCCGCAACT 39876 36 100.0 28 .................................... ACCCATTTCGCCGTGGCCACGGGCTTCG 39812 36 100.0 28 .................................... TCCCGTCAAGTAGAGACGTCCGTTTGCA 39748 36 100.0 28 .................................... ACTGGTTGTCGTGTGTGTCGGTGCTGTT 39684 36 100.0 28 .................................... ACATCACGCTCGCCTGATCCACGCGCCG 39620 36 100.0 28 .................................... GTTGAACGGAGTGAGGTGATTATGAGTG 39556 36 100.0 28 .................................... GTTCGATTACAAGGTTGAGCTTACCACA 39492 36 100.0 28 .................................... ACCGCCCGCGAACCTGCTGCGTGTAGTG 39428 36 100.0 28 .................................... GCGCCTACGGCAACCGGCGCGACATGGG 39364 36 100.0 28 .................................... TGGTTTCGTCCCAACCGTAGACGGTGAC 39300 36 100.0 28 .................................... CGCGGTTGCTCATGCGATCACCTGCCGT 39236 36 100.0 28 .................................... GCCGAGCCATTCGGCCAATTCATCGACG 39172 36 100.0 28 .................................... CTGCGCCGCGCCGTACGCCAACTCTAAG 39108 36 100.0 28 .................................... CGTCCTTGGCTTGGTCGGCGAAGCTCGC 39044 36 100.0 28 .................................... TTGCCGGCAAGCCCCTCGATGGTCTCCT 38980 36 100.0 28 .................................... AAATGGCGGCGGGACATCGTGCTCACGC 38916 36 100.0 29 .................................... TGTCAAGGGAACATGTAAATGCATGTGGT 38851 36 100.0 28 .................................... TGGTCTTGCGTGTCGTGTCTTGAAATGT 38787 36 100.0 28 .................................... AGCCGATTGAGGGTTATCCGGGATTCTA 38723 36 100.0 28 .................................... GGAAATATGCGGTGTGGTTGAGGATTGG 38659 36 100.0 28 .................................... AAAGAGCGTGCCGTACGCGGGCGTCATT 38595 36 100.0 28 .................................... CGCGCCGGACGTCAAGGACGACGGCGGT 38531 36 100.0 28 .................................... CGAAAACTGTCCACTCGTGTTCAGTGTG 38467 36 97.2 28 ..............................C..... CATGTATGACGCGCTCGTGCGCATGCTC 38403 36 100.0 29 .................................... GAACAGTGGCGCCCACAGGTATTGACCGC 38338 36 100.0 28 .................................... ACATCGGCTCGATCGTCATCGGACTCTA 38274 36 100.0 28 .................................... GAAGTGCGCGTATTGGCTGGCGATCTTG 38210 36 100.0 28 .................................... GATGCTGATAGTCCGTGGCAAGGGCGAC 38146 36 100.0 28 .................................... TGTGGGCATGGGTAGTGTGGGTTGATGG 38082 36 100.0 41 .................................... CCGTGATTGGCGCCCCAATTACCATATACAAGTACCATATA 38005 36 97.2 0 .....A.............................. | ========== ====== ====== ====== ==================================== ========================================= ================== 53 36 99.9 28 CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Left flank : CTCAGTTCAATGGAGGGCTGACAATTCCCAGTTCCATTGACGAGTTTGCGCAGCAATTTGGCTTGTATTGCGAGTCAAAGGAGAGAGTATTGACAACTCCGATTTTTGGAGGACAGGATGAAAAAGGATGAGGAGAGTGGGGGAATGTGGTGCTTGGTGATGTTTGATTTGCCTGTGCAGACCAGGAATGAACGACGCGAGGCAACAGCGTTCAGGAATATGCTGCTTGATATGGGTTATATGATGGTGCAGTTCTCCGTGTATGCGAGATATTCACCAACCCAATCGGGAAACCGATCCACGGTGAAAATGATTAAGCAGCATTTACCGTCCGGCGGGAAAGTACGGGTGGTGCATATTAGCGACCATCAATGGGCACAATCTCTGCGTTTTGTCAACGAGGTTCCTCAAAACGATGTGGAGGCACCAGATGTCTGCACTGTTTTTTGAACATCTTTTTAATAAAAATCATTGGGAAACCTACCTTCTTGGCAGGCTAT # Right flank : ATGGGTCTACTTATCTCATGTGTCAAGGTTAGTTTATCAAAGAGCGAGCCAATTTGCAGACTCCCCTATCCCGTTGTCTCGATGAAAGTACAACGCCCAATAGATTGGTAATTGTCCAGAAAACCAGTCCGAGGGGATTTTGATCTATGAGAATGATATATTCGCATCTGCTTAGAAGACCAATGGCCATCCAGATTGATATCGGACACAGCACCGGCATAGGGGCAATAGGTGCGATGCTCGGGTGTAGCATATCCACCATCAGGAGGTAGATCAAGCGCGATATCTGGTTCCCGTTTAACGAGAGTGAGTCCTATTACCTAGGTCAAATGCCTCAAGACCGGTCTGTAGCCGGTCTATTGCATTGCTGGCCTCGCGCAATATAAGCGCAGACTGAAGCGGTGCAGCCGCAGGCGGTCGCATGGCTGGACTGTGGTCGCTTGCTGCTGCCGGTGTCATGGGCAGGCTGCGTGTCCTGTGGCCAGATGATCGGCTCATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //