Array 1 8710-9939 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOBT01000034.1 Aliivibrio fischeri strain emors.11.1 E._mors_11.1.4336_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8710 28 100.0 32 ............................ TCAGATAAGCACAGAGTTCCAAATAAACCCCA 8770 28 100.0 32 ............................ TGCATTTTGATTAGTACCGCACTTACATTTCG 8830 28 100.0 33 ............................ TTAGACGTTGTGAGTTCAACCAATGACAACCTT 8891 28 100.0 32 ............................ TGTAAAATTTTCTTGATGATCAGTCTTAAGTT 8951 28 100.0 32 ............................ CAAGGCAAGCTGAAGGTGCATCTTTGGAAGAC 9011 28 100.0 32 ............................ TAACGGTACGTTTATTCGTTCAATGACGATTC 9071 28 100.0 32 ............................ GATAAAGTCACAGGTGCGGTGGATAGCGTTGG 9131 28 100.0 32 ............................ AAAACAAGAGCAACCTGTGAGCTCGAATGAGC 9191 28 100.0 32 ............................ CATAAGTAATGGAAATCGGCTTTTTCTCTATC 9251 28 100.0 32 ............................ AGTAAATGATATCGATAGCCTAGTACAGTATG 9311 28 100.0 32 ............................ AACTAAACTCACCATCTGATCGATAAATGATA 9371 28 100.0 32 ............................ AAGAAGAATACAAGGAGGCGGCATGATTAGCA 9431 28 100.0 32 ............................ ACACAAAAGGGTTAAATATTTATCTTCTGTTT 9491 28 100.0 32 ............................ AGTTTGGCATAAGTTTGGAGATGAATATCCAA 9551 28 100.0 32 ............................ CAGGAACTACAGCTAAACCTGTAATAAGACCA 9611 28 100.0 32 ............................ AATGGGGAGAAGATAATGCCATTAGACCATAC 9671 28 96.4 32 .........T.................. TCTTCAAGAACCACATGAAGTTTCTTTTTATG 9731 28 100.0 32 ............................ ATTCCCAATTCGATTTCTTCTTTCCATTTATC 9791 28 100.0 33 ............................ GTCAGGTAAACCTACAAAATAGTTTGATACCTT 9852 28 100.0 32 ............................ GTTCATTTCCACTTCGTTTGAGTAACCACCTA 9912 28 85.7 0 .......................GTT.T | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGAAGCAATTATTTGAGATAAATTGGCTGAAAGGCTTACGTGATTATTGCTCTCAAACATCAATTTTATTGGTTCCAGAGGGTTGTCAGTATCGCTGTGTAAAACGTAAACAAGCTAAAAGCGCTAATAATAAACGCAAGCGTTCTATTGCTAAAGGTTGGTTGAGTGAAGAAGAAGCGACATTGAAAATTGGTAATGAACAGCAAAAAATGTTGCGCTTACCTTTTGTTCAATTAAAGAGTACATCCACAGGACAGGTGATGAAGTTATTCATTGAGCATGGTGGATTGCAAGATAAAGCGGTTGAAGGTCAGTTTAATCGCTATGGATTAAGCTCATCAGCAACAGTCCCTTGGTTTTAACCAAAAATAACCTAAAAATTGCTCTTTAAAAATGAGTTAATAAAATCAGTAAGTTACAATAGGTAGGGAGAATTAGGTAAAAATGTGTATTTTTACTTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTATT # Right flank : TTATCTTAAATACTTTTTGAATGTGTTAAACCTTATATTTTTTACGCCTTTACAATCTTTACTTTTTTATTCTGGTTAATAATAACCATTTTCATTATAGTGAATCGAAATACGAATAGTTATCACTTGAGTGTAAAGAATATGAAAAAAAGTATCGCTACAATGTTATTTGGTTTATTAGTTTCTGCATCAAGTTATGCTGAAACGATTACCGTTTCTCATCAATTAGGCAAAACGATGCTTGAGACAAAACCTCAACGTGTTGTTGTTATTGGTACAGGAACGTTAGATGCCATTGATTATTTTGGTATTAAACCAGTAGCGGTAACTCAGGCAACGACAATGCCTTCTTACTTACTAAAGTATAAAACGAAAGAATATGCCTCTTCTGGTAGCTTAAGTGAACCTGATTTTGAGACTATTTACATGCAAAAACCGGATGTGATCATTATTGGTTCACGAGCGGTAAAAGCATATAAAGATCTGTCTGAAATTGCACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 377-111 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOBT01000015.1 Aliivibrio fischeri strain emors.11.1 E._mors_11.1.4336_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 376 28 100.0 32 ............................ AATGGGTTCAATAAGCCATGTAACGGCTTGCT 316 28 100.0 32 ............................ ACCCGCACCGCCTGACATGCCACCGCCGCCAA 256 28 92.9 32 .................T....C..... TTTATAAGAAATGTCGCCATCATCGCCTTTTG 196 28 96.4 32 ...........C................ TGTATTGACGCTCATGTTAAATAAGTTATAGA 136 26 85.7 0 ...........C........-..C-... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCACAATAAATAAAAACACATTAGGCTAGTTATTATTATGGAAAAAATGAGTATGACTCATAAATGGTCAATTAAAAATTGTCCCAAGGATATAGAGAGCCAAGTTTTATCTGTTATTGGATTAATCGATAAGAAAGGTTCAGCTTCAGACATGGATCTCTGTAAGATCTTTGGTGAAGTGTTATGGAGTGACGGGAAATATTTTAACTCGCACGCGTTTCGTTTCTTGTTTGATCATGAGACTCTTTCATGTGAAGTAACGAAGAGACACTTACACTAAAGAAAACCAGCTATGTATTTTTAAGGCCATTATCATTCCCCCTATAATGGCCTTTTTTATTGCCTATATATTGCTTCGCACCCTCTAAATTATCAAAAAAATATCATTCGATAAACTCAGTTTAAAATCAATAAGTTAAGATCCGCCTAGATATTTAGGTAAAAATAGGTATTTTTGCTTATCTGTTTGTTGTAACTTATTTTTTTATTGATATCCTCTT # Right flank : AGCTGAATGAGATCCAAATCATAGTAATCGCAATCATAATATTATTTCATTTACATTATTGGTGTTGTTTAAGTAATTGTTTTATATCGTATAATGATATTAATAATGATA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //