Array 1 30975-29685 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016682.1 Neisseria meningitidis strain M24705 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 30974 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 30908 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 30842 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 30776 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 30710 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 30644 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 30578 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 30512 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 30446 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 30380 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 30314 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 30248 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 30182 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 30116 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 30050 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 29984 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 29918 36 100.0 30 .................................... TGTAAATGAGGTTATTGAAGATGCAAAAAG 29852 36 100.0 30 .................................... TTTTCCAAAGCGTAAAATCACATTCGGGGC 29786 36 100.0 30 .................................... AACACTGATAGGGAATGTACCCTCGATAGT 29720 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //