Array 1 49965-51293 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFHB01000001.1 Listeria monocytogenes strain 2842STDY5753912, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49965 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 50031 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 50096 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 50160 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 50226 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [50238] 50294 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 50359 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 50424 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 50490 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 50554 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50619 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50684 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50749 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50812 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50875 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50941 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 51004 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 51069 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 51135 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 51200 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 51264 29 93.1 0 .......................A....C | C [51287] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 510290-512904 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFHB01000002.1 Listeria monocytogenes strain 2842STDY5753912, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 510290 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 510356 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 510422 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 510488 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 510554 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 510620 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 510686 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 510752 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 510818 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 510884 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 510950 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 511016 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 511082 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 511149 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 511215 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 511281 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 511347 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 511413 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 511479 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 511545 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 511611 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 511677 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 511743 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 511809 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 511875 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 511941 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 512007 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 512073 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 512139 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 512205 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 512271 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512337 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 512403 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 512469 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 512535 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 512601 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 512668 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 512734 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 512800 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 512866 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [512891,512897,512900] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //