Array 1 418300-419365 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHIK01000006.1 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008286 SEEM8286_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 418300 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 418361 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 418422 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 418483 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 418544 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 418605 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 418666 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 418727 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 418788 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 418850 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 418911 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 418972 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 419033 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 419094 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 419155 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 419216 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 419277 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 419338 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 435501-436994 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHIK01000006.1 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008286 SEEM8286_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 435501 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 435562 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 435623 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 435684 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 435745 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 435806 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 435867 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 435928 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 435989 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 436050 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 436111 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 436172 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 436233 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 436294 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 436355 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 436416 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 436477 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 436538 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 436599 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 436660 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 436721 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 436782 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 436843 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 436904 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 436965 29 93.1 0 A...........T................ | A [436991] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //