Array 1 217-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKNT01000122.1 Acinetobacter ursingii strain TUM15280 sequence122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 216 27 100.0 31 ........................... CGAATCTAACTGGATATAGCAACGCATCCTC 158 27 92.6 33 ..C.........A.............. CGAATAAGGTTTAAAGATGATCTGATTCGTTTA 98 27 100.0 33 ........................... ATTATACAAACAAAGGGCAAGATAGCCTAGATC 38 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================= ================== 4 27 98.2 33 TCTCTAAATTGCGTATGCAATATGGAA # Left flank : ATGTAGAAATTATCAATAGTTCTCTACGCCTGTCTTTCAACGTGCCATTAACAAATAATGTTGAAGAAACCTTTAAAAAAATTGTAGACAACAACTATGATTTATTGATGTCGACATCCGCAGAAATGTCATTTGAACTAGAAAATGAAACGCTTGAAATTCTTGAGAAAGTAATTAGAGAACAGGGGATCGAGACGGAAGAATTTATACAGAATACGTTGATTAAATTCATCAATCAAAATGGATTAGATACTACTAAATCTAATCTTTAGACAATAAAAAAGCCCGACATCCTGTCGAGCTTTTTTACATAGGTGTGCATCATACTTCTATCGTGCGGTCCCCGTTCCTTGTGCGATTTTTTAATTCTTATTATTTGGAACATCCTGTTCTCTATGTCTCCATCATATGAAAAAACTAAGAACAGACATAGACGCAATGATCCTTAATTAATGTCAGCCTGGGCTTACAACATTACTTAAAACTTACCCCAAGGTTTA # Right flank : ACAGTTCACATG # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTCTAAATTGCGTATGCAATATGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 66473-65601 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKNT01000015.1 Acinetobacter ursingii strain TUM15280 sequence015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 66472 28 100.0 32 ............................ CCTCGGAGGTGACAGGCGGTTTTTTTATGGAG 66412 28 100.0 32 ............................ GACTGGTCTACATTGAGTAATTTGGCTTTAAA 66352 28 100.0 32 ............................ TTTAAAATTAAACTGGATCTCGTCAGCATTCA 66292 28 100.0 32 ............................ ACTCAAATACTCCAAATCATCAATACCTGAGT 66232 28 100.0 32 ............................ CAAACAACGACACTCCTAACGTTCAAAACAAT 66172 28 100.0 32 ............................ GTTTACAAATGCCCTTGTTGAGGCGTTCTGGA 66112 28 100.0 32 ............................ AATCAACACAGATAATTTGCTTTTGCTCAACT 66052 28 92.9 32 ....T...............C....... TCGTGGCGCATCGACCAACTCTGGCGAATATG 65992 28 96.4 32 ..........A................. TTTAACAGCTATATGGCATGACGATTTAAAAA 65932 28 92.9 32 .T........A................. TTTAACAGCTATATGGCATGACGATTTAAAAA 65872 28 92.9 32 .T........A................. ATTTTGTCCATTGCCTTACGAATTTCGGCAAG 65812 28 92.9 32 .T........A................. AGAGAATTAAGAACGAGTGCTGAAGTGTATCA 65752 28 96.4 32 .T.......................... GCAACGAACAGTTAGAGAGCAAATGCTCACGG 65692 28 96.4 32 ...........................G ATTGGAAATGGACAAGTTTCAGAAGTGGCGCG GATA [65668] 65628 28 78.6 0 AT.................A....TTT. | ========== ====== ====== ====== ============================ ================================ ================== 15 28 96.0 32 GCTTCCTATCGCATAGATAGTTTAGAAA # Left flank : CTTAAAAATTCAGCTTTTTCGCTTGGTAAAAGTTTTGCATCCAAAATCTCGGCATCTGCGGCCCATTCTAGAGAAAGCGTTTGTAAAACTAGCGCAGAGCTTTCTGCAAAATAATCTTCGGTTCCCTGACCTAAATGAGCATCGTATTGACGTAATGCAGTCACTCCAAAACGAATAAAATCACGAATTGTTGTTAAGTTTTCTGCGGCTTCCTGTAATTGTTCAGGATTAATGGTCGGTCGCTCCACTCAGGGGTCTCCAAAAGATGATGATGCAAAACGGCTTATGATACCTTGTTTTGTCTTGCTTTTTAATGCCTAAAACGAGTGGATTCAATTTTAAATCAAGTTGACTTATTGCTCTTTTTAAATCAATATTTTTCTTACTCTTTAATAATATAATAAAATCATACGCTTATGATTTAACTTGTTTTTAAAGCATAATATCAAATTATTAAATTAACTCATTGTTATTAAATGATTTATTAATAAGAGTTTATA # Right flank : TTTCCGTGATTCCAAGCATTTTGTTTTTAATTGCTGCATCGCTAAAGGATCCATCGGTGCAGTCATCATGGCCCGATAAGCCAAACATTCCTGCGTTTCTTCTGTTGCTTGAGATTTGGCATTCAAGCTATGACATCCCATCAGTCCCAAAGAGAAAATACATCCTAAAATAAATTTGATGAACATTGGATTTTCTATAAATAAGTATTTGCCGATATCAACTCCAATTTTAAAACGCAAAACAGCAAATAGAAACCATTGAATAGACATGTTTCATAAGTCCCTGTCATTTTTGCCTATGGAAGAAAAATAAAGAGGGTTTAAACAATGATGAAAGACGTCATAGTGTATAGATCTTTTAAAATTCGCTTATTTTCTTAAAATCTTCTGCCAATATATAAGCATTTTAAAAAGATGAGCTTAATACAATGACAAATCCAGATATTCAAAAGGTAGAACTCGCAAAAGCCTATCGTTTACTTAATCATGGTCCAACTGTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCCTATCGCATAGATAGTTTAGAAA # Alternate repeat : TTCCTATCACATAGATAGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: R [matched GCTTCCTATCGCATAGATAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 113928-115997 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKNT01000005.1 Acinetobacter ursingii strain TUM15280 sequence005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 113928 30 93.3 30 ............................TG TTAAGCCAATCTAATTGATTTTAGATAAAA 113988 30 93.3 30 ............................CA AAATAGTCAAAGCTTAAACTTTGTCCGGAC 114048 30 93.3 30 ............................TG CTGCTGAAGAAGAAAACAGAAAATCAATTC 114108 30 93.3 30 ............................TG ACAGATTGTCAGGTTTAGCAAAAAAGAACC 114168 30 96.7 30 ............................G. AGATTATTCACAATCCATGCCCCCCTCTGT 114228 30 96.7 30 ............................T. GCAGATAGTTCACGCCTTTTGCGTGAATGT 114288 30 96.7 30 .............................A TGAAGTGACCACACTCATTCGCCAAGACGG 114348 30 93.3 31 ............................CA TATTTTTTTGCAGAATTTAACAGAAGTGAAC 114409 30 93.3 30 ............................TC TTTGATTAATTCGTCTCGTTCTTGGTCTAT 114469 30 100.0 30 .............................. TAACAGCATTATTAATATCATTTAGAAAGT 114529 30 100.0 30 .............................. CACCAGAAGTATTAGACGAATTTAAAATCG 114589 30 93.3 30 ............................TG TATGAATCCACAGTCCTTGATACACATAAA 114649 30 96.7 30 .............................C TTTCCGCCTGCTGCTGTTAGCGCTTTGGTC 114709 30 96.7 30 .............................G ACTTGAGATAAGCCATCCGTTAAACCACTC 114769 30 96.7 30 .............................C GATGTTGGTCGTATTCGTGGATTAATTTCA 114829 30 93.3 30 ............................TA AATTGGCTCTTTTCACCGCAATTTCAAATC 114889 30 93.3 30 ............................TA ATGTTGGTAACACTTTTAAAACATCATGTA 114949 30 93.3 30 ............................TG CTTATGATCCTGTTGCTGAAGAACAGAATA 115009 29 93.3 29 ........................-...T. TCTCCATCGATGAATGCCAAGTACAATGC 115067 30 96.7 30 ............................T. AATTTTGGGGTATTGCTACCCTATAAATCA 115127 30 96.7 30 .............................A AGCAGAGCCTTGTACACCAGATTGCACAAA 115187 30 93.3 31 ............................CC ATTGATGATGTCGTTTTGGATAAAAATCAGA 115248 30 96.7 30 .............................C ACAGGTGTTTTAAAAATTCATGCAGGTCCA 115308 30 100.0 30 .............................. TAGCTGAAAATGAAAATGAAGAAAAATCAA 115368 30 93.3 30 ............................TC CATCGCTTTAGATTTATCCACCGATGTTGC 115428 30 93.3 30 ............................GC CAGATCTATACCCAACGCCGCAGCAGCTTT 115488 30 96.7 30 ............................G. CTGAATGTGTCGCTTAATGTTTCTTAGTGT 115548 30 100.0 30 .............................. ATCTTCGATGTAATAGAGAAGCGCAACTTC 115608 30 93.3 30 ............................CG AACAGACTTGTCAACTTTATTTAGCTAGTA 115668 30 100.0 30 .............................. AAGTATTAATCATGGCTTCTGCTGACATTT 115728 30 93.3 30 ..........A.................T. TACGCTTGATGAGATCAATAGTTGGGTCAG 115788 30 93.3 30 ..........A..................G ACCCATTTAGCAGAGAAGAAATGAATACCC 115848 30 93.3 30 ..........A..................G TTACTCGGATGCTTCCCGTTCTAACGCATA 115908 30 93.3 30 ..........A.................T. GTACCTATTCACCAAATTACGTCAGACGAC 115968 30 90.0 0 ..........A.................TG | ========== ====== ====== ====== ============================== =============================== ================== 35 30 95.1 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : TGGAGCAACTGAATCTAACTCATTGGTTAGCAAGGCTGCAAGATTATGTACATATCTTATCTGCTCGTAAAGTTCCTGAGGATAAGGTCAACGGATATGCTACTTATTTTAAAGTTAATCCAAAATTGACTGTTGAGCAGCGTGTTATTCATCAGGCAAAACGTCGTGGAATCTCAATTGAAGAAGCACAGCAACACTTTAAAGCATTGGATTTGACAGAGACTTTTGAACCTTATATCAATATGAAAAGCCAAACCAATGATATGAACTTCCGTTTGATTATTGGAAAAAAACGTGTTGATGAAGCAAATATTGGAAAATTTGGAAGCTATGGATTAAGTCGTACATCTACAGTACCCGATTTTTAACCCAATATTTTTCACACTCTTTAACAGCTTAATAAAATCAATAAGTTATAACTTTGCTTTGAAACTTTGGGTATTTCATACTTTTTAGGGATAAAGCACTGTTATAACTTTATTTTTTGCTTTATTCTTACT # Right flank : GCAAACGACGTGTAAGAGGTTAAGCTGATTAGTTCACTTGAGTAGAATATGGAATCTAACTGATCGTAAAAATGACTTAAAAAAGAAATAATGTAAACAAAAACGCACTGCTTCTGGCGAAACAGTGCGTTAGGTTAATAAGATTATGCTGGTAAGTCAAACCAGATCATTTCACTATCTTCAAGTGCATGAATCGTAGTTTTCTCATCAAACAATAAAGCATCACCTGCTTTAACAATTTGATTCTCAATCATAATTTGACCTTTAATCACATGCACATAATTGTGCTTTTGAGTTGCAGCAATCTCAAGTGTTTTACCAGCTTCTAACACAGCCGCTTTCACTTCTGCATTTTGGCGAATATGCATAGCAGCATTATCATTTGGTCCTGCAATCAAGTGCCATTGGTTTGGCTGTTCACTTGGATCAAGTTTGATTTGTTGATACGTTGGTTCAGCATCGCGTACATTTGGATGAATCCAGATTTGAAATAGATGCAC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //