Array 1 5867-269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTKM01000099.1 Xanthomonas oryzae pv. oryzae strain LMG 9585 contig_99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 5866 31 100.0 34 ............................... TGGCCCTGTGCAATGACCCATTGCCACTGGCATC 5801 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 5734 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 5669 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 5603 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 5539 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 5473 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 5408 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 5343 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 5276 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 5208 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 5143 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 5078 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 5012 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 4947 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 4880 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 4813 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 4748 31 100.0 36 ............................... CGGGGTCTTATAGCGATAACTGGACGATCGAGCAGG 4681 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 4616 31 100.0 34 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGG 4551 31 100.0 34 ............................... CCAGGTAGGTGCCAGTGGCCACAACTTGGAAGAT 4486 31 100.0 34 ............................... TGGTTACAGATGATCATGGGCGATCAGGCCGACA 4421 31 100.0 36 ............................... CGCAAACCAGATGGCAAGTGGCAGCGGGGCAGCAAC 4354 31 100.0 33 ............................... ACTAGCAGCCAGTTTGGCAGGCTGCTTTGCAGC 4290 31 100.0 34 ............................... AGGAAACGGTCGCCATTGGGCAAGCTGCGGCGCA 4225 31 100.0 34 ............................... TTGGGAGCCTATTAATAACATCTAGGACAACCCG 4160 31 100.0 33 ............................... CGTCAATTGTGGTGACAGTTGTTTGCAGGGCAC 4096 31 100.0 34 ............................... TTGCAAAAAAGCAGCCAAGCCGCCGGGAGTTTGT 4031 31 100.0 35 ............................... CCATTTACACCAAGGCCTGCCGGCGAGGTTGCATA 3965 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 3900 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 3835 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 3769 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 3704 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 3638 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 3572 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 3505 31 100.0 34 ............................... CCAGATGCTTGACATGCATGAGCAGGGTGTGTTA 3440 31 96.8 35 T.............................. CGGATGTTCGCCGGCGTGCATGTTGTATGGCGCAC 3374 31 100.0 34 ............................... CTTGAGGACTCGTCGGGCCGCCAGCTGTCTGTCC 3309 31 96.8 34 ...T........................... TGCTGCATGCTTGCGTGCCAATGTAACCTGCACA 3244 31 100.0 34 ............................... ACGGTGGCTGTTAGCTCCAGTACTGTGCTTGCAG 3179 31 100.0 33 ............................... TGGCTGATCAGGCTGCTGGAGTAGATCCAGCTG 3115 31 100.0 34 ............................... TGCATCGCCTCGGCGAGCGCGATGATGAGCGCGC 3050 31 100.0 35 ............................... CCATTTACAGACAGACCTGAGGGCGAAGTGGCGTA 2984 31 100.0 33 ............................... CCAAATCGGAGGTCTGCACTGGCATATGCTGAC 2920 31 100.0 33 ............................... GTTAAGGAAGCTCATGCAGTTGCCCAGGCTCGT 2856 31 100.0 36 ............................... GTCCTGGGACGCCTCGCCGGCAGCGTCGCAGGCATG 2789 31 100.0 34 ............................... ACCTTCCCCGCGATGCGGCCGATGCGCTGCAGGC 2724 31 100.0 34 ............................... TATTTCGCACGAGATGCGTGCAGCACCTGCGATC 2659 31 100.0 35 ............................... AGCTGCGTTGGTCCGACCACTCTGGTGCGAGGTTA 2593 31 100.0 35 ............................... TCGGCGACGTGGAGCACAAGACCAGCAAGAGTGGC 2527 31 100.0 33 ............................... CCATGCGGCGAGGTTTCCACGCTGACACTCCCG 2463 31 100.0 34 ............................... AGCACTGTGTTAGGTGGTATTGGTGGCTCGGGAT 2398 31 100.0 34 ............................... TTAGCCACGATGGCATAAATGTCACTTGGCAGAT 2333 31 100.0 35 ............................... TGAGACTTGTCTCTGAGGCACCAGATATGCAGGTG 2267 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 2202 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 2136 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 2070 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 2004 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 1939 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 1874 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 1807 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 1742 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 1675 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 1609 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 1543 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 1476 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 1410 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 1345 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 1281 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 1216 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 1151 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1085 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 1019 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 954 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 889 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 823 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 757 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 693 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 626 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 561 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 496 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 429 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 364 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 299 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 86 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //