Array 1 18381-16949 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFTE01000003.1 Escherichia coli strain JML218 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18380 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 18319 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 18258 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 18197 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 18136 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 18075 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 18014 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 17953 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 17892 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 17831 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 17770 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 17709 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 17648 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 17587 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 17526 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 17465 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 17404 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 17343 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 17282 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 17221 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 17160 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 17099 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 17038 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 16977 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8644-9528 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFTE01000074.1 Escherichia coli strain JML218 sequence74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 8644 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 8705 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 8766 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 8827 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 8888 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 8949 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 9010 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 9071 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 9132 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 9193 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 9254 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 9317 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 9378 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 9439 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 9500 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //