Array 1 18430-16998 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRW010000019.1 Escherichia coli strain S752 NODE_19_length_113192_cov_63.971300, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18429 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 18368 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 18307 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 18246 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 18185 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 18124 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 18063 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 18002 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 17941 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 17880 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 17819 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 17758 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 17697 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 17636 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 17575 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 17514 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 17453 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 17392 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 17331 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 17270 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 17209 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 17148 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 17087 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 17026 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8964-9297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRW010000022.1 Escherichia coli strain S752 NODE_22_length_102714_cov_64.846267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8964 29 100.0 32 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCG 9025 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 9086 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 9147 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 9208 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 9269 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //