Array 1 92172-89701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHXI010000001.1 Azomonas macrocytogenes strain CECT 4462 Ga0372387_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92171 29 96.6 32 ............................A TTCGTGCGCAGCGCCATGTTGGTTTTGTTGCC 92110 29 100.0 32 ............................. GCACTGGACTATACTGCTTCGAGCCAAGCTCA 92049 29 100.0 32 ............................. CGTTTTTGATGTACACGTCGTCAACGCTACCC 91988 29 100.0 32 ............................. ATAGGCGAGATTTACAATCATCAATGCTTGAA 91927 29 100.0 32 ............................. TTCGTTCGATCCGAAATGTATCTTGAAAGCAA 91866 29 100.0 32 ............................. TTCGTTCGATCCGAAATGTATCTTGAAAGCAA 91805 29 100.0 32 ............................. GCTTTAGCATGTTGCATATCGATACCGCCGGA 91744 29 100.0 32 ............................. CGCAATGATTGCAGACTCTCGATCTTGGATGA 91683 29 96.6 32 ............................T GCGCTATGAACGTATGTAGGGGTGTGTGTCGC 91622 29 100.0 32 ............................. GCCAGGTTAATCATGGCGTTCGCCTCCTCTAG 91561 29 100.0 32 ............................. CGCATATTTTGACGACATTTATCAAGGCGCGG 91500 29 100.0 32 ............................. GCTCAGACCATCCAGACTGTCGCCCATAGTAC 91439 29 100.0 32 ............................. AATTGAATCGGTCCCAGTCGGCTTGCGTTTGG 91378 29 100.0 32 ............................. GCTATTCATGAACTGCAGTTGATCCTGCAGTA 91317 29 100.0 32 ............................. CTATCGATAGTCTGCAGAGACGGCTTGAGCTG 91256 29 100.0 33 ............................. TTTAGATAGTTGCAGATGCAATAGTTGAATATG 91194 29 100.0 33 ............................. AACGCCAGTTTAATAAGTTCGCGCACCAGCGCC 91132 29 100.0 32 ............................. CTGGATGGTGACAAGGGGGTCTCTGATTATGG 91071 29 100.0 32 ............................. TCGTCTCTAAATCCCAGCTCTCCGGGCAGGTT 91010 29 100.0 32 ............................. TTCTAGCTGCGTTCAACTCGTGCCGATTTATC 90949 29 100.0 32 ............................. CATTTGCCGGAAATGCCGGCCCAAGAACGCGC 90888 29 100.0 32 ............................. TACGCATTCGGTTTCCTTGAAACTCCACTCGA 90827 29 100.0 32 ............................. ATCGAGAATCGGCAATCGTTGCGCTTATTCAG 90766 29 100.0 32 ............................. CCGGCGCTTATGAGTTTTCTTACATCAGGCAT 90705 29 100.0 32 ............................. GCGGCTTGCCAGTCCGCCAGGACGCCGGTCAG 90644 29 100.0 32 ............................. CAAATGCTAATTTCACGGCTTTGAATAATCGA 90583 29 100.0 32 ............................. GCCCTGGGGTCGACATCAACATAGCCTACATC 90522 29 100.0 32 ............................. GGGGGAGATCCTGAATTCTCCGGAATACTGAG 90461 29 96.6 32 ............................A TCCAGCGCAGAAAGACCGAGCCGTCTACCTGC 90400 29 100.0 32 ............................. GGAAGCCTTTGTATCCTATAGGGAAAGCTCTG 90339 29 100.0 32 ............................. CATGGCGAGGGCTTTCTTAATCGCATCAGTCA 90278 29 100.0 32 ............................. CCCTCTCCTCCGCTACATCCAGCCCTACAGCT 90217 29 100.0 32 ............................. AGTTTGTGGTGGCTGTGGCGAAATGGATTTTC 90156 29 100.0 32 ............................. GCCACCATTTCCTTGATTGGCCCGATCAACGC 90095 29 96.6 32 ............................C ATCGAAGGGTAGCAGCCCGGCCGGCGCCTCGC 90034 29 100.0 32 ............................. AGATATTCGTCGGGTTTCGCAGCTACGAAAAC 89973 29 100.0 32 ............................. CGCTCTCAAACAAAGCGCTGCTGATACGCCGC 89912 29 96.6 32 ............................T AATGCCGTATCTGACCGCTCTGCTGAATCCGA 89851 29 82.8 32 .............TC.....A.....C.A ACTCCTTGCGCGTGATATCATTTTGATGTCTC 89790 29 89.7 32 ........T.....C...........C.. TTCATGACACGCTCTAACGTCACCCTCGATAC 89729 29 86.2 0 ............T.C...........CT. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.6 32 GCGTTCCCCGCACATGCGGGGATGAAGCG # Left flank : GCAGGATTATTCCCACTATCGAAGACGTTCTGACTGCTGGTGGTATCTCGCCTCCTGAAGCACCACCTGAATCGGTACCACCGGCAATTCCCAACCCGCAGACCCTGGGCGATGCTGGCCACAGGACGCAGTAGATGACTTTTCTGGTCGTAGTCACCGAAAACGTCCCACCTCATTTGCGTGGGCGCATGGCTATCTGGCTACTGGAGGTTCGTGCTGGCGTTTACATCGGTGATGTTTCCAGACGAACTCGTGAAATGATCTGGGAACAATTACGCGAAGGTTATGAAGATGGCAACGTAGTCATGGCCTGGGCCAGTAACCATGAGTCCGGTTATGAATTCCAGACCCTCGGTCCCAATCGCCGCCTGCCTGTAGAATTCGACGGCCTGCATTTGGTAGCTTTTCACCCTGTCGATAACCCTGATCTTTAACAAGAAAAAATCGGTAGATTTTTAGCGTGACCTTTTTTCTTTTAGGGTCAATTGGTTACGCTAAGT # Right flank : GCTGAGTCGCCAATGAAAAGCCTCTGGCGCTGCCACACCAGAGGAACTGCGAGCGTAGGATTGGAGGCCCTGGCAGGGGCTGCTCGCTCGATCAGTTGAGTTCAGCATTATAGCTGCGTCACACTCGAATTCGGCGCCACTCAGAGCCTGTTCAAAGTCTGCTGCGCGTTGGCCATACCGCGTTGAAAATGGCCTGGATCGCCAGCCCGGTCGAAATGCTCATTTACTCCTTTTTCGCCTTGTCTGGCCTTAGCTCGCGAGACTTTGAAAACAGGCTCTCAGGGGCAATTCGGCAAGACTGTGCGCGACTCTATCCCTTGGGGAGCAAGCCTGGGCCAGGTGCGTCCTTCCTCCGTGCCGACCGGATTCAGCTGCTCAGGCCGACATAGACATTCTGTACGTCATCATGACCATCGATGGCTTCGAGAAAGGCTTCGACTTCCTCAAGTTCGGCACCGGTCAGGTTCACCGGGTTCTTCGCCTTATAACCCAGTTGAGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACATGCGGGGATGAAGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 102672-101437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHXI010000004.1 Azomonas macrocytogenes strain CECT 4462 Ga0372387_04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 102671 28 100.0 32 ............................ CAGCGGCCCCAGGCGTAGAACGTCTCACGCAC 102611 28 100.0 32 ............................ TGAGAGGTTTCAAATGTTCAAACGTGCATCTT 102551 28 100.0 32 ............................ ATCGCAAGCACAGGAAAAAACGCAATAGATGC 102491 28 100.0 32 ............................ ATTCGGCAATGTCATCCGCTAAATCTTTTCGG 102431 28 100.0 32 ............................ GGATACTAGTCGCAAGCGATCCGGGGACGATT 102371 28 100.0 32 ............................ ATGCCCGAAGTGCAATGCGGCGGAGTACAGCA 102311 28 100.0 32 ............................ TGATGAGCAGTCTGGCGCGAAATACGGGCCAG 102251 28 96.4 32 ............A............... AATGCCATCGGCTGTTCGTTTGGTGTTTTTGG 102191 28 96.4 32 ............A............... TCCCGGATCAACTCGGCTGGAACCTGCACCAC 102131 28 100.0 32 ............................ AGGCCATCAAGCACGCCCGCCAGGCCATAAAT 102071 28 96.4 32 ......C..................... CTTGCCATTATCTTTTGAGATTAAAGTTACGC 102011 28 82.1 31 T......A...G.C...T.......... AAGCTCCCTCGAAACAAGGGATCAAAGCCAT 101952 28 85.7 32 ...T.....T.TA............... CTTATCAGTATCCTTTGGAATACAAGTGACGA 101892 28 85.7 33 T....T...T.........A........ CCATCGGGGCCTGCGTCGTGTCTGATCTGTTGT 101831 28 100.0 32 ............................ GCTTTGAAAAAGAATCTTCTGCAAAATATAAA 101771 28 100.0 39 ............................ AACGTCTCCTCGAAGAAACCAGGGGCCAAAGCCATCCTT 101704 28 92.9 32 ...........TA............... ATGATAGAAGCTTGCGTGTTCGCAATTGTATT 101644 28 85.7 31 ....G......T..G........G.... AGGAAAATATCGAGTATTTCTGCGCCATAGT 101585 28 96.4 33 .C.......................... TGTCAGTTAAACCCCGAATCTGACCAGGGTCTT 101524 27 82.1 32 T..........AA...........-..G TTGAAGTGGCGCAAGGCCAGTGACTGGCATCT 101465 28 78.6 0 T..........GAC....G..G...... | C [101451] ========== ====== ====== ====== ============================ ======================================= ================== 21 28 94.2 32 CTTCACTGCCGCGTAGGCAGTTCAGAAA # Left flank : CGGCATTGCAACAGCTGATCCGAGCCGACTGGACAACCGGCCTGCGGGACCACATCGCCAGCGGCGACATCGCCCCCGTTCCATCCCAGGCGCGGCAACGAATCGTCCGCCGCGTCCAGGCCAAGAGCAACCCGGAACGCCTACGCCGCCGCCTGATGGCCCGCCGGCAAATCGACGCCGAAGCCGCCCGCCAAGCCATTCCTGACCACCTCGCCGAACGCCTGGAACTGCCCTACGTCGTCCTCGCCAGCCACAGCACCGGCCAGCGCTTCCGACTCTTCATCGAACACCTGCCAGTCCAGGACCTGGCAGTACCCGGCCCCTTCACCAGCTACGGACTCAGTTCCACGGCAACCGTACCCTGGTTCTGACCCTTTTTCGGCATAAGCTGCGCCTCCTATGTAAATCAACCACTTGGAGGCGCCCCGAAAACTTGGGCTACTGCTTACAAACTGGTGATTTTTCTTTAACAATCAATTTATTAAGATGCAGGCTTTGTA # Right flank : ACCGAGTGTAAGATGAAGAACGTGGCCACACCTTTGCCCGAACAGTTCCCCAGGCCAAAGCGCGTAAATGAATTTTTACTGAAAAACACAGCAACTCGTTGACTTTCCGTTTGTCGGAGGGTGTCTTTAGCAGCCCCGTATTCAGATGATTCAAGGAAAGACGATGAACCTACCTCAGTTGTCCGCTGCCGCCATGGTTTTGCTGTTTGCTTCGGCAATCGCCATTTGCAGCACGGTAGAGGCGGACACGGAGGCAAAGCCCAAGCGGGTCGTCGTCGTCCAGTTCGACGGTCTGCACTACCAGGCGCCGGAAAAGCTGGGCCTGACCAACGTTCTGGAGTTGAAGAAGGAAGGTACGTCGGTCGATGAGGCGCTGGCGATCATTCCCTGGCATCCGACGACGGGCGAATACGGGCGCCATTACCTTTCCTCGCTGCCCAATCCGGTCGGCATGGCCGGCACAGTGCTGTTGACCGACAAGTCACGGATGATCCAGCAGA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCGTAGGCAGTTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCGTAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //