Array 1 47441-47034 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTTN01000028.1 Azospirillum lipoferum strain 59b NODE_28_length_72015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 47440 36 94.4 38 ............G...G................... AATCCGTGGGTCGCAAGTTCGCGTCCTGCCGCCGGAGC 47366 36 72.2 38 A..A...C.G.....G.AC.C.G.........T... CGTCGACTGCAAAAACTTCTATGTCAGATGCGAGCGCG 47292 36 94.4 39 ..T...............T................. TCCGTCGATCCAAACCTTACCCGTCAGGGTCTCGGTTGC 47217 36 97.2 38 .................C.................. CTCATAGTCGTTCTCGGTCTGCATCACCTTGTCGCCGA 47143 36 100.0 38 .................................... CCCTGCCCGCGCCTTGCCTACGGTCAGTAGCCGGCACC 47069 36 97.2 0 ....................C............... | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 92.6 38 GTCTTCCGAAGCAGAAATGCTTCGGCCTCATTGAAG # Left flank : GGATTGCCGGCCCGTCTCGCCATCCTCGGCCGTCCGGAGCCGGAGCGCGTCAGCCCCGCCACCCGCGCCCTGCTCGACCGCCTGTCCGGCCCCTTGCGCGCCGATGCCAGCCTGTGGTGGACCCGTGGCGCCGGCCGCATCGCGCCGTCCCTGCTGTCCTGCCCCGGCCTGCCCGCCGCCCCCCGCCCGACCGCCTTCCTCGACGGCGCCTGGACCCGCTGGGGCTGGGAGAACGCAGACGAGGGGTAGGGAAGGGCGGCCAAGCCTGTGCCGTGCGGTGGCATCGCCCTCCGCCCCATGCTATCGTTCCCGCTGCCGCCCACCGCCGCGAGCGGTCCGGCACAGGCGAAAACCCGGCCAGCGCTTACAAAAGCGGAGCCGTTGTTTTCCTTAGGATCTTTGACATCGTCCAGAACCTGAGCGGATCAGAAAACCTGGACCATCCTTCACCTCATTGAAGCACATAGTGCGGCGAGACACGAAGTGTCGCGCGCGTCACA # Right flank : CTTCCACGCCGTTCCAACTGTCCCCGGCATCCCCAGCCGCGCCCGCCGCTCTCCATCGCGGCGGGCGGGACTCTCAGGCCAAGCGTTACCGCGTCCCCGCCATCTCGCGGTCGAAGCGGGCCAGCGCCTCTTCCAGCCCCCACTGGACCCGCGCCTTCTCGCTGCGGGCGGTCACGGCGCGGCAGGACTCCTTGCGAACAGGTGGGGTGCAGCCGGGGGCGGACCACAGGCTGTCGCCGGGCAGGAAGCTGTGCTCCAGGCTGGCGCGGGCCAGCCCGACGAGGTCGGCATAGCCGAAGCCGAACTCCTCCACCGCGCGTTGCAGCTCGTTGGTCAGGTCGATCCGGCTGACGCCTTCATCGTCGGTCGACAGCACCACCGGCACCCCGGCGGCGCGATAGACCGGCAAGGGGTGGGCCTTGCCGCTGACGCCCAGGATCTTGTCGTTGCTGGTCAGATTGACCTCCACCGCCACCTTGCGCTCGGCCATCAGCCGCAGC # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCGAAGCAGAAATGCTTCGGCCTCATTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.40,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 4754-7401 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTTN01000012.1 Azospirillum lipoferum strain 59b NODE_12_length_210399, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 4754 29 93.1 32 A.............T.............. TTGGGCAGCCACACCACCGGCTTTGAAAAGCC 4815 29 93.1 32 ....A.........T.............. CTTGGCGGCCGGGTCTGGAAGGCCGGTGTTGG 4876 29 93.1 32 ...A..........T.............. ACGACGGCGCAACTCGAGGAAATCGCGCACTC 4937 29 86.2 32 ..............T.....AG...G... TTCCGCGCGTCGGCCAACGAAGAGCCCTACGA 4998 29 82.8 153 ...........A.TC..T...G....... AACGGGGAGGTTTCGAAAGACGCCAGATCCTGCCCTTCCTCACTCGCGGGGGGTGAAGCGATCACGCAGTTGAAGTTGCCCATCTGGTCGATCTCTTCCTGGCACGCGCGGAGGTGAACCGGCCCAGTGCTCGTGCTGCGGTCCGGAGGCCTG 5180 29 79.3 33 ..A.......T...TC.....G.A..... ACCGCCTAGTGGACGAAGGACCGGGCTACCGAG 5242 29 86.2 32 ........T.....T..A...G....... TCCCACCCGGGAAACCTGGGCTTACTGTCGCA 5303 29 79.3 32 ...........AT.T....A.G......A TTGAGAATGTAGCGGCAGGCGTCGCTGCTAGC 5364 29 75.9 33 .....A.T.AT.......A..G.C..... ATGAGCAAGCCGACAGCCGCGGCATACAAGGCA 5426 29 79.3 27 T.T.........TGC......G....... ACGCGCGGGCGCTCAAGCCGCACCTCG 5482 29 69.0 32 T..A.....T....C..AA..G.AT.... TAGACCTCGCGGGCCGACGGGATGATCGCAAG 5543 29 79.3 32 ....A...A..C.GT......G....... GTGCGGTAGCCGGGGCCAGGGTCGCGACCCTC 5604 29 86.2 32 .........A....T......G...G... ATGCAGAATGAGGAGCACGCGACCATCGGCGG 5665 29 89.7 32 ........T...T.T.............. CAGTATTGAAAGGAATGAAAGAAACGCGACAA 5726 29 86.2 32 .T..............TA...G....... ATCACCTCCAAGGCCAAGGTAATGGGCATCAA 5787 28 82.8 32 ...........A..T-....AG....... GCCTACCGGGTCAGCGCCAGATAGTCCGGGCC 5847 29 82.8 31 ..A..T..T.....T......G....... CTGGTCAGCGTGGCGTGGTCGAACCAGACGC 5907 29 93.1 32 ...........A..T.............. ATGATGGAGGAGGCCTCCAACGCCTGGATGTG 5968 29 79.3 32 ..T..........GTC...A.G....... TGGCCGCTCTCCAGGGGGAAGACGTTCGGGGT 6029 29 100.0 32 ............................. TAGTATTGGATCGCGTCTTCCTGTGATCCGAA 6090 29 93.1 32 .....................G...G... ATGTGCATGTCCGACGAAAGCAGACAACGGGT 6151 29 82.8 32 .....T.A...A.T.......G....... GTGATGGGCTTTGATGGGGCGGCCGACAACAT 6212 29 82.8 32 ........T..CT.T.............A GACTCGCACCACGCCATGGCCGTAGTGAGCGC 6273 29 86.2 32 .......T....G.T......G....... CTGGGCACCACCAATCGGATCGGCAACAACGC 6334 29 89.7 32 ...A.............A...G....... GCTGATACCGCAACGTCGCGCGGACGCCTGCG 6395 29 89.7 32 ...........A..T......G....... TAGCCGGCGACCGGCGACACCGGGCGGACCGG 6456 29 89.7 32 ..............A.....AG....... CTGGACTTCGCCGTCGACATCGGCGTCATCAA 6517 29 79.3 30 T..........ATGC......G....... CTGGACGGCGCCTTTCTCACCCGCACCGAG 6578 29 89.7 32 ..............T......G.A..... AGCCAGAACCGGTCCCATGCGGTGATGGCCCA 6639 29 100.0 32 ............................. TATTTCGGGCCGTCGCCTTCTATGAGCCGGCC 6700 29 89.7 32 .............TT.............A ACGCTCGCATGACATTCGGCCTGATCGCGTTC 6761 29 72.4 33 .TT.....T..C.GT.T....G....... CTTTATCAGGCTCTCGGGGCAATACGTCGGCCC 6823 29 86.2 32 ..T........C..T..........C... CGCCCCACCCATCCGGCCAGGCTGCCGGAGAC 6884 29 75.9 92 ..........T....AT....G.A.GT.. TCCTCAGTCTTGCCCTCCATCAGATCGGCATCCTTTCTCTATATACGCGGGGTGAACCGGCGTGCATCAGGCAGGCAAGTGTGAGTGCGCCC A [6904] 7006 29 79.3 32 G..........A..T......A.A...T. CTGTAGGCCACGCCGCGGCAGTACGCAGCGAT A,T [7024,7028] 7069 29 86.2 32 ........TC....T.T............ AAGGAGGTCGGGGAGTTCGCCACCGCCATGCA 7130 29 89.7 32 ..............T....A.G....... CGGCCAGACCGGATCTTGGTCGGTGAGGTATG 7191 29 82.8 32 ..T........A.GC......G....... CAGTGATCGACGACGGCACGCAGATTGTCCGG 7252 28 86.2 32 .....-....T...T..A........... TTGCCGCCGAAGGTTTGGATCACATCCGCAAG 7312 29 86.2 32 .......T...C..T......G....... ATGTGCTGGCCCAGCAGATAGGTGAGGTCCGA 7373 29 75.9 0 ...........AA.AA.T...G.T..... | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 41 29 85.1 36 CCCTTCCCCGCGCAGGCGGGGCTGAACCG # Left flank : TCGTGCCGTTGATCGAAGACGTGTTGACCATCGACGGGGTCCTGCCGCCGTCAGCGCCCCCGGAAGCGTTGCCCGTGGCAATAGACGACAGGGAGCAGAGCGGCGATGCTGGTCATCGTTCTTGAGGCAGCACCGCCCCGTCTTCGTGGGAGACTAGCTCTGTGGCTGCTGGAGGTTCGCGCCGGCGTCTACGTCGGTAGAGCTTCCCAGCGGTTGCGTGACCGGCTGTGGGACGAGATCCTGGTCAACATCGAGGATGGCAATGCGGTCCTGATCGAAGCCAACTCCAGTCTGGAAGGCGGCTTCACCTTCCGCACTGCCGGCAAGTCCAGGCGCTTGCCGGTCGATAGTGACGGCTTTCCATTGGTTGCCTTCCACCCCGAAGATGGGTGACAAGGGCAGGGTGCTTGGACATGGTGAAGACTGCATCAAATGCGAGAAGAAGTCGGTAGGCTTCCCGCAGAACGTTTCAGTGTTTTATTCCAATGGCTTTCAGCCAT # Right flank : GTCGTTCGCGGCGTCGGCAGATGCACTTTCCCCACCCATGCCAAGCTCATCAAGCAGATGCTGATACTCATTGCGAAGCACTTTTGAAGGAGGCTTCTACCCGCATGGACCATCGCCCATTGCAAGGCAGGTATCAAATAGACAGATATGCGCCAATTCCGGGCAGTCATATGCATGCTACCCTTGGCGCATGAGGTAGTGAACCACAGAAGCTTCCTTTTATAATATTATCGATATATGATTATCCACTGTTTATGTCTGCTTCCCAATGTGCGCAGCCGTTGGCTGTGCAGATTTCAGAGGGGCCGTAATGGAGTGGTTCCAACGCTCCCAGGCTGTTAAAAAACAAAGGTAGATTGAGAGATTCCGTTCCGTGCCATTTCAACAGAATTAAATTTCGCTTTCCTAAGTACAACATTGCTTTGACCTATATCCTCGAGGATCCAAGATAAAATCAAAAAGGAAGCAACAATACCTATCCAGATTGGGACTTATCTACA # Questionable array : NO Score: 4.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.25, 5:0, 6:0.25, 7:-0.38, 8:1, 9:0.08, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTCCCCGCGCAGGCGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCAGGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [66-73] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //