Array 1 455054-455682 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAARXY010000003.1 Listeria innocua strain FSL L7-0285 NODE_3_length_461061_cov_113.515562, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    455054	    36	 100.0	    30	....................................	CTATAATCCTGGAACTGGAGTCTATGATTA	
    455120	    36	 100.0	    30	....................................	GAAAAACGATAACAAAAACGGTTAGTAACT	
    455186	    36	 100.0	    30	....................................	CGGCACTGTAAAAAAAGCGGTCGAAGAGTT	
    455252	    36	 100.0	    30	....................................	GCTCATGGGAGCTTTTCGCAGCATTGACAT	
    455318	    36	 100.0	    30	....................................	TTCACTCGCGATAGCTTTAAGCGCGGTCAT	
    455384	    36	 100.0	    30	....................................	ACCGTATTTTAGATGAAAAACGTTGGCCAG	
    455450	    36	 100.0	    30	....................................	GAAGAACGGCTTTTACGAGGTGATTTTAAA	
    455516	    36	 100.0	    30	....................................	TGTAAGGTCCATTCAATTAGATATGACCGC	
    455582	    36	 100.0	    30	....................................	ACAAGTGGAAACATTAGTATCTATGCAATA	
    455648	    35	  86.1	     0	..............C.....C....A....-...C.	|                             	
==========	======	======	======	====================================	==============================	==================
        10	    36	  98.6	    30	GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC	                              	       

# Left flank :   TTGATAAGCTGGCTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGCAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTTGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG
# Right flank :  CACATCTCTCAATCTACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAGAGGCCCCAACACATGACACAATACCACTACCTCGCCTCAAAAGTAGCACTAAAAACTACGACACACGAAAATAAGACAGATTTTATATATCAAAACGACTTAGACTTCCTGAGTTTGAACTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACTTGCAATTTTCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTAGCTTTGACGAATAAAACAGAATTAGCCATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAA

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.30,-0.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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