Array 1 756-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYP010000003.1 Acidithiobacillus sp. CV18-2 Contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 755 29 100.0 32 ............................. TAGTGGACGCGGCTGGAGAACTAACTTCAACC 694 29 100.0 32 ............................. GAGCCATGCGTCATAGCCAATGCCAGCGGTCC 633 29 100.0 32 ............................. GCAGCGGCTCGCTTGGGTTTGCCGCTGTGCCG 572 29 100.0 32 ............................. CTGGCAAGCGTTCTGTTGCCTGTTCTAGATCC 511 29 100.0 32 ............................. GTGCCATCGGGTACAACGGCAGTGGTTTTTGA 450 29 100.0 32 ............................. CAATCCATATCCCCTGACGGAAAATCGCTCAC 389 29 100.0 32 ............................. GCGGCAAACTCCGCGTCCGGCTCGGCTATGAC 328 29 100.0 32 ............................. CAGCACTGACCGGGACATCAGATCCATCTTGC 267 29 100.0 32 ............................. AGCTAAAAACGCCTTGGGGTCGATCATACATT 206 29 100.0 32 ............................. GTGTCAATTCCGAACAGCCCCCCGGCCATGGA 145 29 100.0 32 ............................. TTCTCCCGTCCATATCGAGCACGGCCTGCTTT 84 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GGGTTCCCCGCGCGAGTGGGGATGAACCG # Left flank : ACGCTTGCTGGAGCGTATCATCCCTGGCATAGAAGACATGCTTGCGGCAGGTGAAATCACGCCACCAGAACACTTTAAAGAACAGATTGGTCCCGCCATTCCCAACCCGGAGTCTATTGGTGATGATGGTCATCGTGCTTGAGAACACCCCTGCGCGGCTGCGCGGACGCTTGGCCATCTGGCTGCTTGAAATCCGTGCTGGAGTCTATGTTGGAAACTATTCTTCCAAGGTGCGCGGCTATATCTGGAGCCAAGTGGAGGCTGGCATTGGCGATGGAAACGCTGTCATGGCCTGGCGAGCGAACAATGAAGCTGGTTTCGACTTCATTACAATCGGTCAGAACCGCCGTACCCCTGCGGAGATGGACGGTGCGAAGCTCGTGAGTTTTCTGCCGCTGGACGATCAAAATGCTCTTTGACAATTTGCGCAATCAAACCAAAAAATCGGTAGATTTTGGTATTGTTATTTTTCTATGGTAATTCATAATATTGCAAGAAGA # Right flank : GACTCAGATCGCGTACTTGACTAAGGCGTTAGCGGGTTCCCCGCGCGAGTGAGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCGCGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 64649-62722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYP010000176.1 Acidithiobacillus sp. CV18-2 Contig176, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 64648 29 100.0 32 ............................. CGTCACCAGCAGTGCGTCAATGACCGTTGCCA 64587 29 100.0 32 ............................. AGGAATATTGTCGCTTGGCATCTGTATCTCCC 64526 29 100.0 34 ............................. CAGCAGGAATGGAGTACCCGCCGCCGTTATTCTC 64463 29 100.0 32 ............................. GGATTTTACGGTGGGCTGGTATTCCTCACCGA 64402 29 100.0 32 ............................. GAAGGATACGAATACGGGTACCAGAGCGCCAT 64341 29 100.0 32 ............................. CCACCCTTGCTGCGCTTCTTGCCCAAGTCGCG 64280 29 100.0 32 ............................. GTTTCACTTTTTACGTCGTCCTTGTGTATGCC 64219 29 100.0 32 ............................. CATCAGCCGGTGCTGGCGTCTGATTATGCGGC 64158 29 100.0 33 ............................. TACGCTCCCATGAGTAGGCAGGAAACCGCTGAT 64096 29 100.0 32 ............................. TAGCTGGGCGTGGCAATAGTGAAAGTGCCGCC 64035 29 100.0 32 ............................. ACACGAAAAACTGAAGATCTAATGCCGCCATT 63974 29 100.0 32 ............................. TATCAAGCGACATTGCGAAAAACCGCAGCTTC 63913 29 100.0 32 ............................. CGATGCCGCATATGCCTCGCCGTTGCCGTTGT 63852 29 100.0 32 ............................. TAGCATTCGCCAGCCGCGATCCGTTCTATGGC 63791 29 100.0 32 ............................. TGGTGGCATCAGTCTATGCGTGGCATACCGTA 63730 29 100.0 35 ............................. AAGTTTTATTGGCGCAGTATAGACGAATATAAAAA 63666 29 100.0 32 ............................. CGGACCAGACAGAAAACCGCTGGTATACATGC 63605 29 100.0 32 ............................. GTATCCATCCCCTTTTTAACCGCCTCCTGCGC 63544 29 100.0 32 ............................. TCGCATTCGTCGGCCCGGGCGCTGCGTTGTGC 63483 29 100.0 32 ............................. TGCCATATTGCCTTGTTGCAAATACGAGGCTT 63422 29 100.0 32 ............................. CGTTGCCGCCCTTACTGCTCGAGGCGTTGGAA 63361 29 100.0 32 ............................. GATTGACGCCTAGCGCTTGTGCTGTTGATGGC 63300 29 100.0 32 ............................. TGTACTGATGAATAACGGGTTCAACCCGCAGA 63239 29 100.0 32 ............................. CATGGGAATTAGCTGCATACGGCACCCGCCCA 63178 29 96.6 32 ............................T TCTCGTGAAGGTGGCTACACTTGTGTAAGTCC 63117 29 100.0 32 ............................. TTCTGCGACGGATTGTAGGGATTAACGCCTAG 63056 29 100.0 32 ............................. CTGTTCCACTAGCCCATCAGCGGATGTGCCTG 62995 29 100.0 33 ............................. CACGGCTATATCATAAAAACAAAAAAGGGTGCA 62933 29 100.0 32 ............................. GGAAACTACACGGTTAACATAGGCGACCATCC 62872 29 100.0 32 ............................. CAGAATCAGCCATCGCCAAGGCCGTAGGCAGG 62811 29 96.6 32 ............................T ATATCTAACACGATACAAACCCCAAGTGGGCC 62750 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 32 29 99.8 32 GGGTTCCCCGCGCGAGTGGGGATGAACCG # Left flank : GCGAGTGGGGATGAACCGACTCAGATCGCGTACTTGACTAAGGCGTTAG # Right flank : GTCACCGAGGACAGATGACCACCTCTGATTATGGATTCCCAAAGACTTCTTGGCCCGAAATATGGGCCAAGGCCAAGGATGAAAGCTATACCAGAAAACGACGTCCGACGTTGAAATCTGGTATAGCTTTCTCGCCGAAAACAGGATGCGCCAGAGCAAAAATTGGTGATGCCCTGACCGCAACCGTCACACCGACCGCGCAAGCTGGAAGGTGGGGCTGGGCGCGGGAATCGCCATCACCGGGGTGTCCAGAGGGGGCTTGCCCCCCTTGGCCTACGTGACGTAACGATAGTTACAGCTAGTAGGTTATGCCTTAAGGCGCATCCCAACCTACCGGGCAACGCGAAAACAGGCGTATCCTAGGGGCAGGCGGAGCGTCGCCCGACAGGCCGGAAGCCACCCCTGCAAGGCAACCGTCGCGACCGCTGAAGGCTGGGAATGACCGGGCGCATTGCTGATGGCGAAGGCCGCAAGGACCGGCGCGAACTCGAGGTTCTCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCGCGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //