Array 1 3112-3741 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXU01000045.1 Ruminococcus sp. AM43-6 AM43-6.Scaf45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3112 36 97.2 30 ......................T............. GCCTGTGATAAACTCAGCTCAAATTTGTAC 3178 36 94.4 30 ......................T..G.......... TTGAACGTAATTGAACCGCCTGCTTCAACC 3244 36 100.0 30 .................................... GCTGGCTCTACTTTTATTATTTCTGGCTCG 3310 36 94.4 31 ..........G....A.................... TCCTCGATTACCTTGTATGTGCCGATTGGGG 3377 36 100.0 30 .................................... ACATTTCTTCAAGATAATTCGGAGAGGCAC 3443 36 97.2 30 ..........G......................... TATCGTCAATAAAAGATGCATCCTGTGTGC 3509 36 94.4 30 ..........G....A.................... TAAACTCGACTGCACGACGCTTGCAAAGTC 3575 36 88.9 29 ......T...G....A..........G......... TGCAAACCGCTTTTCTCAAAAGCATATTT 3640 36 100.0 29 .................................... AAGATCCTTGTCATAGTAGCAACCAAGAA 3705 35 83.3 0 ..........G..............C.-A..C...G | GG [3736] ========== ====== ====== ====== ==================================== =============================== ================== 10 36 95.0 30 CTACTACACTAGTGCGAATTTGCACTAGTCTAAAAC # Left flank : ACAATAGACTAGGGGGTGATAAAAATGGGAAAGACGATCCTTAAGGCTATCATTGTAGCTGTACTTGACTGTGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATGAAAATGAGAAAAAAGATACTTACAACTATCCTTTTATCGGCACTTAACTGTGCGATAGCAGTTGTTAAGGAAATTGAGAGCTGTGACGAGATCACAATAGACTAGGGAGGTGATAAAAATGGGAAAGACGATCCTTACGACTATCCTCATAGCCGTACTTGACTGCGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTAATGAAAATGCTTTATGTAAAACAACCACTTTCTATTGACATTTGTGTCTGAAAATGGTATAATATATATGTGTTAAAGCGTCGATAAGATAAGTTTGGTGTTTTATTACAAAATATCATTGATTATTTTGTCAACTTTGAC # Right flank : GTTTAACATCAAAACCAACAAATAAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTGATATTTATGGCAAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCCCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTATTCCTGCGATCGCTGCCATGCCTGCTGCAGAGGCTGCTGCACCTGCGGCAGAGAAGAAAAAATCCTCCGTCAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCGAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGACAATAATGACTACAACAAAACTCAGCTTTCCTCTGAGGACAGCAGCAATATCGAGCTTGGTGATGTAGACGAGGTAAACATCACTTTTTCAAGCAAGCATGGCTTTGGGAGCGGAGTGAAGATAAATACTTCAAACCCTACTCACAGAAGCGGTGA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTAGTGCGAATTTGCACTAGTCTAAAAC # Alternate repeat : CTACTACACTGGTGCAAATTTGCACTAGTCTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 79932-78245 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXU01000013.1 Ruminococcus sp. AM43-6 AM43-6.Scaf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 79931 36 100.0 30 .................................... GGAACAAAAAACGATATTTTAAAAATGTGT 79865 36 100.0 31 .................................... GCAACACTAGGGGAACTTGCGCTTGCCTCTT 79798 36 100.0 30 .................................... GTAAAATATCATGTATGTATAACTCTTACC 79732 36 100.0 30 .................................... TAGTTGAGTATTATCGCAATCAGTATATAG 79666 36 100.0 30 .................................... GCCGTAAATTCCGTTAAAGTCAACACCTGT 79600 36 100.0 30 .................................... CGCACAGTACTGTCAGCCTTTCTTTCAAAA 79534 36 100.0 30 .................................... ACTGACGTTCACAGAGGAAATTCTGGGAAC 79468 36 100.0 30 .................................... TCATTCCAAGCTCGTGAAGCCTGTATATCT 79402 36 100.0 30 .................................... GCCGTAAATTCCGTTAAAGTCAACACCCGT 79336 36 100.0 30 .................................... TTTGTTCGCACGCATAGCCTACAGTACGAC 79270 36 100.0 30 .................................... GTTTCTAATTCTACGTCGATTTTCCTAGTG 79204 36 100.0 30 .................................... TTCCCACTTGACAAGAACATATGTTCGTGT 79138 36 100.0 30 .................................... ATCAGCGACCTGTTTTGCCAGTTTGCTGAC 79072 36 100.0 30 .................................... TTGTATGTAGTGCTGTTAAACTGACCATTG 79006 36 100.0 30 .................................... AAGTCGTACTATCTGAACGTCTGCATGGGA 78940 36 100.0 30 .................................... AAATGTCGGTTACGATTGGGTTCGCTAGTT 78874 36 100.0 30 .................................... CGCAAAGCTAGGTGGCAACAAGCTGGACGA 78808 36 100.0 30 .................................... TATTTCAGCAGATAAGTATGACGGCAATGT 78742 36 100.0 30 .................................... CGAAAAGATACCAATGGGACGTTTCACCTG 78676 36 100.0 30 .................................... TGTAACAATGCGTTATGCCTATTTCAACAG 78610 36 100.0 30 .................................... TTATTTACCGACAGAATTTGTGATTGCTAA 78544 36 100.0 30 .................................... CTTTTGTTGATTTCCGTCAGCCGTCCGTAT 78478 36 100.0 30 .................................... CAACATTTTCCAATATCATTCCTACATACA 78412 36 100.0 30 .................................... TGGTGAATTTGGCGAATACGGCTAACATAG 78346 36 100.0 30 .................................... CATGGAAGCCGCCCTTGATAAGTATGGCAA 78280 36 91.7 0 ...........A............T.......T... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 99.7 30 GTTTGAGAGTAGTGTAATTTTATAGGGTAGTAAAAC # Left flank : TGTCTATCTCTCTTTTCTTTTTTCTTAATTTTGTCCAATATCTATTGTAGCACTACAGACAAGGATATGTGCGTTATCTGAATTTTGTTGACTTTTTATATTTGTATGCTATAATATAATTACTGCCTAATATAAAATGCACTGATGAGTAGTGTCATTATCTTAAATTTGA # Right flank : TTCCAAGACAGGATATTGTTCTTACACCAAAAACTGAAAATAGATTATTTTTTTGTGGATGAAAGATATGAGCAGTGATTTCCGTTGGATGAGAATGAATCGTTCTACATTGGAAAGTCGATAGCCGGATTAAAGTTGAATCAGTCGGCACAGAATCCGATTACATCACGATACAAGATACCATGGAGGAATATGATAATGTCGAAAGATGAGTATTTGATAACCGATACGCCCTTCAAAGCGTTGACGGTTTTTGCAATGCCAATGATTATTGGAAGTTTCTTTCAGCAAATATACAATATGGCCGACTCTGTTATTGTCGGTCAGTTTGTTGGTTCTTCCGCACTTGCAGCTGTCGGTGCATGTGCAGCATTGACCAATGTGTTCATTTGTGTGGCACTGGGAGCCGGTGTCGGAGCCGGTGTGCTTGTGAGCCGTTATTTCGGAGCCAGGGAGTATGGCAAAATGAAAACAATCGTGTCAACCTCCTTGATTAGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTTTATAGGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 5120-4762 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXU01000014.1 Ruminococcus sp. AM43-6 AM43-6.Scaf14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 5119 32 100.0 33 ................................ GCAGTTCCGAAATAAATACTGTGTTTTTCTCGC 5054 32 100.0 33 ................................ TTTCACTTAACCACTCCCCTCTCAATTTTAACG 4989 32 100.0 33 ................................ GTAGCTGTCATATTCTCTATAGTAATGCTTCAC 4924 32 100.0 33 ................................ ATTGTGCGCCTATACTTATCATATGCCAAGCTT 4859 32 96.9 34 ...........................G.... GACAGCGATATCAAGGTAGCTAACGAATATATCG 4793 32 90.6 0 ...................CA..........A | ========== ====== ====== ====== ================================ ================================== ================== 6 32 97.9 33 GTTGCAACTTACGCATAGGTGTAAAATACGAG # Left flank : AACTATCCAAATGGAAAAGCTGACGGGTATTACATCTAAATCTGATCGTTTTCTAAAAGACTGGACTTATTATGACCTCCAGACAAAGATAGAAAGCAAGGCAAATGAGGCAGGGATAAAGGTCGTCTATATCGCCCCTGAATATACAAGTCAGAGATGCAGCAAATGCGGATATATCCACAAGGATAACAGACCAAATCAAGCGAAATTTAGATGTCTTAAATGCGATTTTGAAAGTAATGCCGATTATAATGCAAGTCAGAATATCGGTATAAAAAATATTGATAAAACAATTAAAAAAGAACGAAAAAAGCAAAAGAGCGAAGCCCAAGTGAATGAAAAATAAGTAAGGGTTTCGCACAATTTCAGGGCGACTCGGCGTCCTAAAATCGAGAAAGTGTACATAAGTATTTAACAAAATACGGTAAATACTCTCGGTAAGGTTTTAACGTGCACATAATAATCCGTGCAACAGGGTTACACTTTTGTGCAATTTTGCA # Right flank : GCACTCAATTTGCATTGTGATACGATATCGAATTACAATCACATATTTGTAAAACAACAAAAGGGCTGTCCACACAGCCCTTTTGTTCTTATCTATCCTATGCCAAGCCCCTTACCCCTTAGGCTTTTTCATAGTAAGCGAAATACGCTTTTTCTTCAGGTCAACGTTAAGTACCCAAACCTTAACTACCTCCCCGACCTTTACGACCTCAAGAGGGTGCTTTATATATCTGTCGCACATCTGAGAAATATGTACAAGTCCGTCCTCATGAACGCCAATATCAACGAACGCTCCGAAGTCTATAACGTTTCTCACTGTACCCATAAGCTCCATGCCCGGCTTCAAGTCTTTAAGCTCCATGATGTCGCCACTTCTCATAAGCGGTGGAGGCAACTCGTCACGAGGGTCACGGCCCGGCTTTTCAAGCTCCCCTACTATGTCCTTTAACGTCGGAGCACCAATGCCGATATCTGTGGCAAGCTTTTTCATGCCCATTGCAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACGCATAGGTGTAAAATACGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 309206-316744 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXU01000001.1 Ruminococcus sp. AM43-6 AM43-6.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 309206 32 100.0 35 ................................ TTATCGCACGGCTCAGGCAGAGTGAGAGCGGTCAG 309273 32 100.0 35 ................................ GCAATACTCTGCAAAGATTTCTTCGGGGTTCGCCC 309340 32 100.0 34 ................................ TTCCGTGCCTGCACTGACAATCTCACCTGCATTA 309406 32 100.0 33 ................................ GCCTGTGATTATAGTATACCATGTTATCTAGCA 309471 32 100.0 34 ................................ TTGAAGATCTCAGCATACTTTGGCGTGTCCCTCG 309537 32 100.0 35 ................................ GAATCCGTCTATGATAGCACCGATTATTTCGGGAA 309604 32 100.0 34 ................................ TTTTTATTATGGTATGTTTACCCACCACACACCC 309670 32 100.0 33 ................................ TATTCTGGTAAAATAGCCCTTGACCGCCTGCCT 309735 32 100.0 34 ................................ AGCTTTCATTTTTTCGATTACGTTCTGCGGTATG 309801 32 100.0 34 ................................ TGCGATGTTGTGTGACATCAACCTTGCGCACATT 309867 32 100.0 34 ................................ GACAATACCTTGGTCTGTAGTTGTCACGATTTCC 309933 32 100.0 34 ................................ ATCTTCGTCGAGGAACGAAAAATCCCATACGAAT 309999 32 100.0 34 ................................ TGATTTCGCTATCTTCAAGAACCTTTAATGCGTC 310065 32 100.0 35 ................................ TATCATACCTCTTCCCTTTTAAAGCAGACTTGCAC 310132 32 100.0 33 ................................ TGAAAGCCACAGAAACGCCATATACACAACACA 310197 32 100.0 34 ................................ CCGCAGCGCGCACAAATGGCAGACGGACGGACAA 310263 32 100.0 33 ................................ CTCAACGCACTTGACGGAGATGACGAGCAGGAA 310328 32 100.0 33 ................................ TCAACGTCTGCCGAAATTATATGATAATATCTA 310393 32 100.0 33 ................................ TTTTTTCCGTGTTCCATTCTTTTCCATTAAAAA 310458 32 100.0 33 ................................ CATTTCCTACCACTTTAATTGATAGGTCACGAA 310523 32 100.0 33 ................................ TTTCCATTATTTTTCCTCTCTTTCTAGTTGCAA 310588 32 100.0 35 ................................ AAATGTCATTTTTCTTTTTCCTCCAAATCTGTTAA 310655 32 100.0 36 ................................ GCTTATGGTCGCTGAGGCTTATGAACTCTGTCTCAA 310723 32 100.0 33 ................................ GCTTGACAAACAAATTAGGGACATCACCGCAGA 310788 32 100.0 34 ................................ GCATTGCGTGTTTGAAAGTGAAAAGACGTTCCGC 310854 32 100.0 34 ................................ TGCATGGTTGTTGACGGAATAACAGCCGCAACGT 310920 32 100.0 35 ................................ CAGACCACCAATCTTGACAGTTCTACGTTTCTTGC 310987 32 100.0 33 ................................ GTATTTAAACTTCATTCCAGGTTTAAATTTGAT 311052 32 100.0 34 ................................ GTTTTCTTTAAGGTAGTGCATAACAGCTTTGTTG 311118 32 100.0 33 ................................ TCGGATCAACGTCCTCTGCGTCGGTTTCACCTG 311183 32 100.0 34 ................................ CTGACACTCTTGCGGTATCGCAGAGAACGTCAAG 311249 32 100.0 34 ................................ TGACGCTGATGATTGCAGTGCAATTCTGAAAAAG 311315 32 100.0 33 ................................ GCTTGTCAGTTGCTTGTCGGTTGTCTTGGTACA 311380 32 100.0 34 ................................ TGACATTCTTTGCTAAACCCCACTATGCCGTGCC 311446 32 100.0 34 ................................ TTTTTGATTATCTCTGCCTTTGACAAAATCTGTC 311512 32 100.0 35 ................................ TTTCGCGTGAGCGAGAACCTTACACCTCATAGCGC 311579 32 100.0 34 ................................ TTGCCTTATAATGGTAAATTTCGGCATCATCGTA 311645 32 100.0 34 ................................ GTCAATTCTGACATCTGGCTGAGATTGAATATAC 311711 32 100.0 33 ................................ CATCTAGCTTGTTGCCGCCTAACTTTGCGGATA 311776 32 100.0 34 ................................ TTGCTTGACCAACGTGACGTTATTCGGGTCTAGC 311842 32 100.0 34 ................................ TGCGATGTCAAACTGAATCGCCAGCCTGCTACCC 311908 32 100.0 34 ................................ GTTTATGCTAAACCCTCGCTTTTCAATGTTGTGT 311974 32 100.0 34 ................................ TTTCTGCTCGTCGTCAAATTCCAGTGGATAGTTG 312040 32 100.0 33 ................................ GCCCTATCGGGCTATTATACAGTATAGCACATT 312105 32 100.0 33 ................................ TGCTGACAGGGGGAAGATAACCCCTGAGCAGTA 312170 32 100.0 35 ................................ GCTGTTGTCGCAGCTCACACATACGCTTGCCGTAC 312237 32 100.0 35 ................................ TGCAAAGGCATTGCTGGGAAGCGCTGAGATAGGAC 312304 32 100.0 33 ................................ GACTTTGGGGCGAATGCAGGCACGCACCAAATC 312369 32 100.0 33 ................................ GGCACGTTTCAGACGAGCTGATAAAAGCGTTTG 312434 32 100.0 34 ................................ TGTTTGATAAAATTATTCAATCCGCTGGTCTTAG 312500 32 100.0 34 ................................ ACCACCCCGAAAAATTCGGTTACAATCGAACGAG 312566 32 100.0 33 ................................ TCGTCTCCAGTGTGGGCGGATTGATAGCGTTCT 312631 32 100.0 33 ................................ TCGGTGGCAAAACTTGTCAAGGCAAACAAAGGC 312696 32 100.0 35 ................................ TTCCCACGTTGAGGAAATTTCATATTTCTCCCCCT 312763 32 100.0 33 ................................ CCAACAGCATTCGCATATATGGTTCAGGGTTTA 312828 32 100.0 34 ................................ TGCCCTTACCGCCTTTTTTTGCGTGACCATGCTC 312894 32 100.0 33 ................................ AGAGTTACAAGACGGTCATAGATCACTTCACAC 312959 32 100.0 33 ................................ TTCCGTCCGTAGCGGATAGCTGAATATAGACAG 313024 32 100.0 33 ................................ TCATTATCCTGTTGAGTATCTGACTTGCTTCAA 313089 32 100.0 34 ................................ GACCGTGAACACTGTTAGAACGCTTGATAAGGCG 313155 32 100.0 33 ................................ GACTATTGGCTTCAATAGGCTCATGAAGTACAA 313220 32 100.0 33 ................................ GTGTAATACTATCATCGTGCATTGCACGCTGCC 313285 32 100.0 34 ................................ TCAAATTCTTCCTGCCGATTATAATAGACCACAT 313351 32 100.0 34 ................................ TAACGACGTCCACTGTTTCTCTACGACGTCGACT 313417 32 100.0 34 ................................ GATAACACCGCTATTTTTCTTGAAACCTTTAACA 313483 32 100.0 34 ................................ ATTCATGAATAATCGTTAAATAATTGATAGGGGA 313549 32 100.0 34 ................................ TGTTTATAATGGTTCTGAGCCGTTTGAAATTGCA 313615 32 100.0 33 ................................ GAGCCTATCACCCTTGACGTTTGGCACTGTAAG 313680 32 100.0 34 ................................ GAAATATAGCGGAATTATTGAAGTATGCACCGAA 313746 32 100.0 34 ................................ ACGCTGGAGAGATTCATGATAAATAATATCCATA 313812 32 100.0 35 ................................ TAATGGCATTGACACAACGGCTTATGCTGATTATA 313879 32 100.0 34 ................................ CTCTTTATCCTACTATATATCAGACTTCCGGATC 313945 32 100.0 33 ................................ CATCTTCTCCTGATGTTCCTAATAAACATGAGC 314010 32 100.0 34 ................................ TCCCTTATTCGCTCTGAGTGTTTTCATCGGGATC 314076 32 100.0 34 ................................ ATCTTCATTGCAAAAACAGCAGGCACCGCCTTGA 314142 32 100.0 33 ................................ TGCAGACGTGACCGCCACGTATGACGGCGTGAC 314207 32 100.0 34 ................................ CGCTCCTATTGCGGCTCGCTGCGTTGCGCTCCCC 314273 32 100.0 33 ................................ GTGTAACACCTACGGCTTGAAAATATGTGGCGG 314338 32 100.0 34 ................................ CAAAAAGAGGGGAACGCCGCTCAAGATACCCCCT 314404 32 100.0 34 ................................ ATTAACGGAGAACAGGGCAGTGCAGGAACGAGAA 314470 32 100.0 33 ................................ TTAAAGCTTGCTTACACATTTTCGCCATAAGCG 314535 32 100.0 34 ................................ CTTTTTTATCGTATATTCTGAATAAAAGATTAGA 314601 32 100.0 36 ................................ CTATTGCGGGGGGCGCGGCTTGCCGTCCCCCCGCCA 314669 32 100.0 35 ................................ GGTCATATTCACCAAAAAATAACGCACCGTAAATA 314736 32 100.0 33 ................................ CTTGCGAAATTGTTATGTTCTGCCACTCGTTTC 314801 32 100.0 34 ................................ GACTATAAACCCCGACATGACGATAAAACAGCTG 314867 32 100.0 35 ................................ TCCTTTTTCTGTCATGAAATAGTTCTCAATGGGGT 314934 32 100.0 33 ................................ TTTTAGTATACACCGATTAGAATAATATCTGCT 314999 32 100.0 35 ................................ TGTATAAACACATGGGGTTATATTTAACGGTACAC 315066 32 100.0 34 ................................ CCTCACCCGTTGCAATTGATATATGACCGATATT 315132 32 100.0 36 ................................ TTTGTTTGTGAATGGTGTGGCAAGATATTTGTTGAT 315200 32 100.0 36 ................................ ATTTTTTATCACCTCACTTGTAGCCCCGTAGGGCTA 315268 32 100.0 34 ................................ TTCCCTGTTCTATCCATTCCGCCAATCTCGGAAA 315334 32 100.0 34 ................................ CAGGTTGTTCAGCATATCAATAACGTTGATTATC 315400 32 100.0 33 ................................ TTTTTGAATATTGTTTTCTGTTATAGCTTACGG 315465 32 100.0 34 ................................ ATTATTCATTAATCCCCATGTTAAACGGTCAGTA 315531 32 100.0 33 ................................ ATTTTTATCACCTCACTTATAGCCCCGTAGGGC 315596 32 100.0 34 ................................ TCATTTCCTTGTTACCTTTTAATGGTAGCATTGT 315662 32 100.0 33 ................................ TAAATAGATTTTCACACGTTCTGCAGGGTTGAC 315727 32 100.0 34 ................................ GCGTCTTTGGGAACTGCGTTCACGCCTGTTATGG 315793 32 100.0 33 ................................ GCAGAAGAACTTTACACCGTCAACGAGGATAGG 315858 32 100.0 34 ................................ AGCGTGAGTGACCCGAAGCCATACGCTGACAAAG 315924 32 100.0 34 ................................ TCTATGTAATCTTTCCATTCCGAAAAGCTTTCTT 315990 32 100.0 34 ................................ GGTATGAAGTCGGAGAATTAAGAAGAAAGTGAGG 316056 32 100.0 35 ................................ TATAACGGCTTAGGCGGTCGAGGTAAAACTATAAG 316123 32 100.0 33 ................................ TTTTCAAATAATGTATGCTCTTTTGCTCCGCCA 316188 32 100.0 33 ................................ TAACTGTTGATTGAACATAGTCATTAAGACTAA 316253 32 100.0 33 ................................ GAAAAGGATATGCAGGAAGAAGATTAATCTTCT 316318 32 100.0 33 ................................ TGCAGACGTGACCGCCACATATGACGGTGTGAC 316383 32 100.0 33 ................................ AGGTATGTTTACGAATTTGCTGAAACGATTTTT 316448 32 100.0 33 ................................ GAAGAATACAACGCACAGCACCGCTACAGTGCA 316513 32 100.0 35 ................................ ACAAAGTTTCCTGAGTACACCTACACCCCGGGTGA 316580 32 100.0 35 ................................ CAAGGAATGCTTTCGGGCATATATGCACTTTTTCT 316647 32 100.0 35 ................................ GCATACAGTCGGTATTACTATGACGATAATGGCGA 316714 31 90.6 0 .........................-.C..C. | ========== ====== ====== ====== ================================ ==================================== ================== 115 32 99.9 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTTAGAAAAGTAGCCAAAGAGTGTCAAAATTATGGTCAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTTGACTACGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGAAACAATTGGAAGCATAGAATAGAACACTACGGCACCAAAGAGACCTATGACCCCGAAGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATATGTGAATGAACAGTGAACAAAATCAAACCGATACCAATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : TTTCGTTTCAACGCAGGACTTATCGATATTGAATAATACAAATAACCGCGTGACTAAGGTCGGGCGGTATTTTTATACCCAAATACTATACATTTTTCATGTGCTTTTCGTCAAATCCACCAATTCACACCCCGAAATTTGTGCAAACAAATGATTTATAATTTAATTTGGCAACATTTCTGCAATTGTTGCATTTTTTCTGCAACAAAATACCCACTTTTCGTGTATAAGTAGAAGAGGTTTCACCACAAATCGGAAACCTTGCGGAGCGACAGTGTATGAGGAAACATTTTGTCAACGTGAGTTAGGTGAACACGATGAGAGGTTCTGATCGCACAGAAAAGCACTTCCTGCACTCCGTCTGAAGCTTGAAAATTGAATATTTATACCGACACACCTTAGCTATACCCCATGAGCATACTGCTAAATTTAATTGTTATAACCGCCTTTGTTGACATTATTCATATAAAATGGTATACTTAAAATAAAATTTATACATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 59953-60136 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXU01000015.1 Ruminococcus sp. AM43-6 AM43-6.Scaf15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================ ================== 59953 23 100.0 30 ....................... AAATATCGCAACTTCATAAAAAATTAAACT 60006 23 100.0 30 ....................... TTTTGTGTATACTTGTAATAAAATAACGAA 60059 23 95.7 32 .....................A. ACTAATAAAATCGGGACAAAAACAGCCCTGTT 60114 23 95.7 0 ..............A........ | ========== ====== ====== ====== ======================= ================================ ================== 4 23 97.8 31 TGTTCCATTTTAAATTCAAAATA # Left flank : TTGAACTTATCAAACAGATAGAGATCAATATAGATTATATTCTTATACTTGTCAAGAAATATCACGATAGTCACTGTGAAGATAAAGAGGTACTTGTTTCAATCAAGAAAGCCATTGATGCAAGCCCCGAGCTTCGTAGCAAAAAAGCTCTTATTGAAACCTTTATTGCTGGTATAAATGATGTAGAAGATATTATGTCAGAATGGCACGACTACGTTGTAGATAGACGTGAAGAAGAACTTGTTCAAATCATTAAAGACGAAAAGCTGAAAGAACCTGAAACACGAAAATTTATAGAAAATGCATTCCGTGATGGTGAGATCAAAACAACAGGAACAGACATTGATAAGCTTATGCCTCCTGTATCTCGCTTTGGTGGTGGAAATAGAGCAGTAAAGAAACAAAGTGTTATCGATAAGTTGAAAGCTTTCTTTGAAAAGTTTTTCGGTGTTGGTGGTTCAACAAGATTCACTGATGAAGATGAACCCTAATATAAAGTA # Right flank : AAACACCCATTGTAAAATTACAATACAATAAAACCCAAAAATTTTTTCAGCCAAAATCGCAAAATTTTGAACATTATAGCCGTTAAAACTCAAAAGTTTAAAAATCAAAACTCGTCAAAAAAATGAACATTATAGCAAGGAAAACTCAAAAACTCAAAACTGCAAAATCCGAAAATAATGAACATTATTACTGACATAAAACAGCAAACAGCATATGACTATCGGGGCAATACAAAATCGTATTGCCCTGCGTTGTATGTATGAAAGGAGCGGAAAATGAATTATTGTGAGATAAAGAAAACCGATATCGCCAATGGCTCAGGAGTGAGGGTCACGCTGTTCGTATCAGGCTGCAGACACCACTGCAAGGGCTGTTTTCAGCCTGACACTTGGAACTTTGACTACGGCAAGCCTTTCACAGATACCACCGCAGACGAGATAATTAACGCCCTCTCAAAGGGCTATATAAAAGGACTTACGCTCCTTGGCGGCGAGCCTAT # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTCCATTTTAAATTCAAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //