Array 1 5320-6872 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWN01000008.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5147 NODE_8_length_240535_cov_71.893819, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5320 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 5381 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 5442 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 5503 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 5564 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 5625 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 5686 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 5747 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 5808 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 5869 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 5930 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 5991 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 6052 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 6113 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 6174 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 6235 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 6296 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 6357 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 6418 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 6479 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 6540 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 6601 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 6662 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 6723 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 6784 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 6845 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23187-23704 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWN01000008.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5147 NODE_8_length_240535_cov_71.893819, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23187 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 23248 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 23309 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 23370 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 23431 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 23492 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 23553 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 23614 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 23675 29 93.1 0 ............TC............... | A [23702] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //