Array 1 251185-249507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBF010000005.1 Salmonella enterica subsp. enterica serovar Derby strain HA2-WA5 YZU1227_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 251184 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 251123 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 251061 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 251000 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 250939 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 250878 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 250817 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 250756 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 250695 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 250634 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 250573 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 250512 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 250451 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 250390 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 250329 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 250268 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 250207 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 250146 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 250085 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 250024 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 249963 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 249902 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 249841 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 249780 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 249719 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 249658 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 249597 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 249536 29 93.1 0 A...........T................ | A [249509] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 268646-267825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBF010000005.1 Salmonella enterica subsp. enterica serovar Derby strain HA2-WA5 YZU1227_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 268645 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 268584 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 268523 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 268462 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 268401 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 268340 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 268279 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 268218 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 268157 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 268096 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 268035 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 267974 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 267913 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 267852 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //